List of sequenced animal genomes facts for kids
This list of sequenced animal genomes contains animal species for which complete genome sequences have been assembled, annotated and published.
Contents
Porifera
- Amphimedon queenslandica, a sponge (2009)
- Stylissa carteri (2016)
- Xestospongia testudinaria (2016)
Ctenophora
- Mnemiopsis leidyi (Ctenophora), (order Lobata) (2012/2013)
- Pleurobrachia bachei (Ctenophora) (2014)
Placozoa
- Trichoplax adhaerens, a Placozoan (2008)
- Hoilungia hongkongensis, nov. gen H13 Placozoan (2018)
Cnidaria
- Hydra vulgaris, (previously Hydra magnipapillata), a model hydrozoan (2010)
- Nematostella vectensis, a model anemone (starlet sea anemone) (2007)
- Aiptasia pallida, a sea anemone (2015)
- Acropora digitifera, a coral (2011)
- Renilla muelleri, an octocoral (2017, 2019)
- Stylophora pistillata, a coral (2017)
- Aurelia aurita, moon jellyfish (2019)
- Clytia hemisphaerica, Hydrozoan jellyfish (2019)
- Pocillopora damicornis, cauliflower coral (2018)
- Nemopilema nomurai, Nomura jellyfish (2019)
- Rhopilema esculentum, Flame jellyfish (2020)
- Cassiopea xamachana (Scyphozoa) (2019)
- Alatina alata (Cubozoa) (2019)
- Calvadosia cruxmelitensis (Staurozoa) (2019)
- Dendronephthya gigantea, an octocoral (2019)
Deuterostomia
Hemichordates
- Saccoglossus kowalevskii, Enteropneusta (2015)
- Ptychodera flava, Enteropneusta (2015)
Echinoderms
- Acanthaster planci, starfish (2014)
- Apostichopus japonicus, sea cucumber (2017)
- Strongylocentrotus purpuratus, a sea urchin and model deuterostome (2006)
Tunicates
- Ciona intestinalis, a tunicate (2002)
- Ciona savignyi, a tunicate (2007)
- Oikopleura dioica, a larvacean (2001).
Cephalochordates
- Branchiostoma floridae, a lancelet (2008)
Cyclostomes
- Petromyzon marinus, a lamprey (2009, 2013)
Cartilaginous fish
- Callorhinchus milii, an elephant shark (2007)
- Rhincodon typus, Whale shark (2017)
- Carcharodon carcharias, Great white shark ( 2018')
- Chiloscyllium punctatum, Brownbanded bamboo shark (2018)
- Scyliorhinus torazame, Cloudy catshark (2018)
Bony fish
- Order Anabantiformes
- Betta splendens, Siamese fighting fish (2018)
- Order Beloniformes
- Oryzias latipes, medaka (2007)
- Order Centrarchiformes
- Oplegnathus fasciatus, barred knifejaw (2019)
- Order Characiformes
- Astyanax mexicanus, Mexican tetra (2014)
- Order Cichliformes
- Oreochromis niloticus, Nile tilapia (2019)
- Metriaclima zeb, Lake Malawi cichlid (2019)
- Order Clupeiformes
- Clupea harengus, Atlantic herring (2020)
- Coilia nasus, Japanese grenadier anchovy (2020)
- Sardina pilchardus, European sardine (2019)
- Order Coelacanthiformes
- Latimeria chalumnae, West Indian Ocean coelacanth and oldest known living lineage of Sarcopterygii (2013)
- Order Cypriniformes
- Anabarilius grahami Regan, Kanglang fish (2018)
- Danio rerio, a zebrafish (2007)
- Heterandria formosa, Least Killifish (2019)
- Oxygymnocypris stewartii,(2019)
- Megalobrama amblycephala, blunt snout bream (2017)
- Order Cyprinodontiformes
- Heterandria formosa, least killifish (2019)
- Xiphophorus maculatus, platyfish (2013)
- Nothobranchius furzeri, turquoise killifish (2015)
- Order Esociformes
- Esox lucius, northern pike (2014)
- Order Gadiformes
- Gadus morhua, Atlantic cod (2011)
- Order Gasterosteiformes
- Gasterosteus aculeatus, three-spined stickleback (2006, 2012)
- Order Gymnotiformes
- Electrophorus electricus, electric eel (2014)
- Order Lepisosteiformes
- Lepisosteus oculatus, spotted gar
- Order Osmeriformes
- Protosalanx hyalocranius, clearhead icefish (2017)
- Order Perciformes
- Channa argus, northern snakehead (2017)
- Dissostichus mawsoni, Antarctic toothfish (2019)
- Eleginops maclovinus, Patagonian robalo (2019)
- Larimichthys crocea, large yellow croaker (2014)
- Lutjanus campechanus, Northern red snapper (2020)
- Parachaenichthys charcoti, Antarctic dragonfish (2017)
- Seriola dumerili, Greater amberjack (2017)
- Sillago sinica, chinese sillago (2018)
- Sparus aurata, gilt-head bream (2018)
- Order Salmoniformes
- Salmo salar, Atlantic salmon (2016)
- Oncorhynchus mykiss, rainbow trout (2014)
- Oncorhynchus tshawytscha, Chinook salmon (2018)
- Order Scorpaeniformes
- Sebastes schlegelii, Black rockfish (2018)
- Order Siluriformes
- Ictalurus punctatus, channel catfish (2016)
- Order Tetraodontiformes
- mola mola, ocean sunfish (2016)
- Takifugu rubripes, a puffer fish (International Fugu Genome Consortium 2002)
- Tetraodon nigroviridis, a puffer fish (2004)
Amphibians
- Ambystoma mexicanum, axolotl (2018)
- Xenopus tropicalis, western clawed frog (2010)
- Nanorana parkeri, High Himalaya frog (2015)
- Oophaga pumilio, Strawberry poison-dart frog (2018)
- Rana [Lithobates] catesbeiana, North American bullfrog (2017)
- Rhinella marina, Cane toad (2018)
- Vibrissaphora ailaonica, Mustache toad (2019)
- Leptobrachium leishanense, Leishan Mustache toad (2019)
Reptiles
- Order Crocodylia
- Alligator mississippiensis, American alligator (2012)
- Alligator sinensis, Chinese alligator (2013, 2014)
- Crocodylus porosus, salt water crocodile (2012)
- Gavialis gangeticus, Indian gharial (2012)
- Order Squamata
- Anolis carolinensis JBL SC #1, green anole lizard (2011)
- Dopasia gracilis, Burmese glass lizard, (2015)
- Emydocephalus ijimae, Ijima's turtle-headed sea snake, (2019)
- Eublepharis macularius, Leopard gecko (2016)
- Hydrophis melanocephalus, slender-necked sea snake, (2019)
- Laticauda colubrina, yellow-lipped sea krait, (2019)
- Laticauda laticaudata, blue-linged sea krait, (2019)
- Ophiophagus hannah, king cobra (2013)
- Pantherophis guttatus, corn snake (2014)
- Pogona vitticeps, Australian dragon lizard (2015)
- Python molurus bivittatus, Burmese python (2013)
- Salvator Merinae, tegu lizard (2018)
- Shinisaurus crocodilurus, Chinese crocodile lizard, (2017)
- Order Testudines (Chelonii)
- Chelonia mydas, green sea turtle (2013)
- Chrysemys picta bellii, western painted turtle (2013)
- Pelodiscus sinensis, soft-shelled turtle (2013)
- Platysternon megacephalum, Big-headed turtle (2019)
Birds
- Order Accipitriformes
- Haliaeetus albicilla, white-tailed eagle (2014)
- Haliaeetus leucocephalus, bald eagle (2014)
- Aegypius monachus, cinereous vulture (2015)
- Aquila chrysaetos, golden eagle (2018)
- Order Anseriformes
- Anas platyrhynchos, mallard duck (or wild duck) (2013)
- Order Apodiformes
- Chaetura pelagica, chimney swift (2014)
- Order Bucerotiformes
- Buceros rhinoceros silvestris, rhinoceros hornbill (2014)
- Order Caprimulgiformes
- Order Cariamiformes
- Cariama cristata, red-legged seriema (2014)
- Order Cathartiformes
- Cathartes aura, turkey vulture (2014)
- Order Charadriiformes
- Charadrius vociferus, killdeer (2014)
- Himantopus novaezelandiae, kakī/black stilt (2019)
- Himantopus himantopus, pied stilt (2019)
- Recurvirostra avosetta, pied avocet (2019)
- Order Ciconiiformes
- Nipponia nippon, crested ibis (2014)
- Order Coliiformes
- Colius striatus, speckled mousebird (2014)
- Order Columbiformes
- Columba livia, pigeon (2014)
- Order Coraciiformes
- Merops nubicus, carmine bee-eater (2014)
- Order Cuculiformes
- Cuculus canorus, common cuckoo (2014)
- Tauraco erythrolophus, red-crested turaco (2014)
- Order Eurypygiformes
- Eurypyga helias, sunbittern (2014)
- Order Falconiformes
- Falco cherrug, saker falcon (2013)
- Falco peregrinus, peregrine falcon (2013)
- Order Galliformes
- Arborophila rufipectus, Sichuan Partridge (2019)
- Gallus gallus, chicken (2004)
- Meleagris gallopavo, domesticated turkey (2011)
- Numida meleagris, helmeted guinea fowl (2019)
- Pavo cristatus, Indian peafowl (2018)
- Phasianus colchicus, Common Pheasant (2019)
- Syrmaticus mikado, mikado pheasant (2018)
- Tetrao tetrix, black grouse (2014)
- Order Gaviiformes
- Gavia stellata, red-throated loon (2014)
- Order Gruiformes
- Order Leptosomiformes
- Leptosomus discolor, cuckoo-roller (2014)
- Order Mesitornithiformes
- Mesitornis unicolor, brown mesite (2014)
- Order Opisthocomiformes
- Opisthocomus hoazin, hoatzin (2014)
- Order Passeriformes
- Acanthisitta chloris, rifleman (2014)
- Corvus brachyrhynchos, American crow (2014)
- Corvus hawaiiensis, Hawaiian crow (2018)
- Eopsaltria australis, Eastern yellow robin (2019)
- Ficedula albicollis, collared flycatcher (2012)
- Ficedula hypoleuca, pied flycatcher (2012)
- Geospiza fortis, medium ground-finch (2014)
- Hirundo rustica, barn swallow (2018)
- Lonchura striata domestica, Society finch (2018)
- Manacus vitellinus, golden-collared manakin (2014)
- Lycocorax pyrrhopterus, Paradise-crow (2019)
- Manacus vitellinus, golden-collared manakin (2014)
- Paradisaea rubra, red bird-of-paradise (2019)
- Pteridophora alberti, king of saxony bird-of-paradise (2019)
- Ptiloris paradiseus, paradise riflebird (2019)
- Taeniopygia guttata, zebra finch (2010)
- Order Pelecaniformes
- Egretta garzetta, little egret (2014)
- Pelecanus crispus, Dalmatian pelican (2014)
- Order Phaethontiformes
- Order Phoenicopteriformes
- Phoenicopterus ruber ruber, American flamingo (2014)
- Order Piciformes
- Picoides pubescens, downy woodpecker (2014)
- Order Podicipediformes
- Order Procellariiformes
- Fulmarus glacialis, northern fulmar (2014)
- Order Pterocliformes
- Pterocles gutturalis, yellow-throated sandgrouse (2014)
- Order Psittaciformes
- Amazona leucocephala, Cuban amazon (2019)
- Amazona ventralis, Hispaniolan amanzon (2019)
- Amazona vittata, Puerto Rican parrot (2012)
- Ara macao, Scarlet macaw (2013)
- Cyanoramphus malherbi, kākāriki karaka (2020)
- Melopsittacus undulatus, budgerigar (2014)
- Nestor notabilis, kea (2014)
- Order Struthioniformes
- Struthio camelus australis, common ostrich (2014)
- Order Sphenisciformes
- Aptenodytes forsteri, emperor penguin (2014)
- Aptenodytes patagonicus, king penguin (2019)
- Eudyptes chrysocome, Western rockhopper penguin (2019)
- Eudyptes chrysolophus chrysolophus, Macaroni penguin (2019)
- Eudyptes chrysolophus schlegeli, Royal penguin (2019)
- Eudyptes filholi, Eastern rockhopper penguin (2019)
- Eudyptes moseleyi, Northern rockhopper penguin (2019)
- Eudyptes pachyrhynchus, Fiordland-crested penguin (2019)
- Eudyptes robustus, Snares-crested penguin (2019)
- Eudyptes sclateri, Erect-crested penguin (2019)
- Eudyptula minor albosignata, white-flippered penguin (2019)
- Eudyptula minor minor, little blue penguin (2019)
- Eudyptula novaehollandiae, fairy penguin (2019)
- Megadyptes antipodes antipodes, yellow eyed penguin or hoiho (2019)
- Pygoscelis adeliae, Adélie penguin (2014)
- Pygoscelis antarctica, chinstrap penguin (2019)
- Pygoscelis papua, gentoo penguin (2019)
- Spheniscus demersus, African penguin (2019)
- Spheniscus humboldti, Humboldt penguin (2019)
- Spheniscus magellanicus, Magellanic penguin (2019)
- Spheniscus mendiculus, Galápagos penguin (2019)
- Order Strigiformes
- Tyto alba, barn owl (2014)
- Strix occidentalis caurina, northern spotted owl (2017)
- Strix varia, Barred owl (2017)
- Order Suliformes
- Phalacrocorax auritus, double-crested cormorant (2017)
- Phalacrocorax brasilianus, Neotropic cormorant (2017)
- Phalacrocorax carbo, great cormorant (2014)
- Phalacrocorax harrisi, Galapagos cormorant (2017)
- Phalacrocorax pelagicus, pelagic cormorant (2017)
- Order Tinamiformes
- Tinamus guttatus, white-throated tinamou (2014)
- Order Trochiliformes
- Calypte anna, Anna's hummingbird (2014)
- Order Trogoniformes
- Apaloderma vittatum, bar-tailed trogon (2014)
Mammals
- Subclass Prototheria, Order Monotremata, Family Ornithorhynchidae
- Ornithorhynchus anatinus, platypus (2007)
- Subclass Theria (marsupials and placental mammals)
- Infraclass Metatheria (marsupials)
- Order Didelphimorphia, Family Didelphidae (opossums)
- Monodelphis domestica, gray short-tailed opossum (2007)
- Order Dasyuromorphia
- Order Diprotodontia
- Family Macropodidae
- Macropus eugenii, tammar wallaby (2011)
- Family Phascolarctidae
- Phascolarctos cinereus, koala (2013 draft)
- Infraclass Eutheria (placental mammals)
- Family Macropodidae
- Order Didelphimorphia, Family Didelphidae (opossums)
- Infraclass Metatheria (marsupials)
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- Order Erinaceomorpha, Family Erinaceidae
- Erinaceus europaeus, western European hedgehog
- Order Eulipotyphla, Family Solenodontidae
- Order Chiroptera
- Family Megadermatidae
- Megaderma lyra, greater false vampire bat (2013)
- Family Mormoopidae
- Pteronotus parnellii, Parnell's mustached bat (2013)
- Family Pteropodidae
- Pteropus vampyrus, fruit bat (2012)
- Eidolon helvum, Old World fruit bat (2013)
- Family Rhinolophidae
- Family Vespertilionidae
- Myotis lucifugus, little brown bat (2010)
- Family Phyllostomidae
- Leptonycteris yerbabuenae, long nosed bat (2020)
- Leptonycteris nivalis, greater long nosed bat (2020)
- Musonycteris harrisoni, banana bat (2020)
- Artibeus jamaicensis, Jamaican fruit bat (2020)
- Macrotus waterhousii, Waterhouse's leaf-nosed bat (2020)
- Family Megadermatidae
- Order Primates
- Order Erinaceomorpha, Family Erinaceidae
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- Family Cercopithecidae
- Macaca mulatta, rhesus macaque (2007 & Chinese rhesus macaque Macaca mulatta lasiota in 2011)
- Macaca fascicularis, Cynomolgus or crab-eating macaque (2011)
- Rhinopithecus roxellana, golden snub-nosed monkey (2019)
- Family Hominidae
- Subfamily Ponginae
- Pongo pygmaeus/Pongo abelii, orangutan (Borneo/Sumatra) (2011)
- Subfamily Homininae
- Gorilla gorilla, western gorilla (2012)
- Homo sapiens, modern human (draft 2001 91%-96% complete)
- Homo neanderthalensis, Neanderthal (draft 2010)
- Pan troglodytes, chimpanzee (2005)
- Pan paniscus, bonobo (2012)
- Subfamily Ponginae
- Family Cercopithecidae
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Strain: C57BL/6J, mouse (2002)
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- Rattus norvegicus, rat (2004)
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- Order Lagomorpha
- Family Leporidae
- Oryctolagus cuniculus, European rabbit (2010)
- Family Leporidae
- Order Lagomorpha
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Protostomia
Insects
- Order Blattodea
- Blattella germanica, German cockroach (2018)
- Periplaneta americana, American cockroach (2018)
- Zootermopsis nevadensis, a dampwood termite (2014
- Cryptotermes secundus, a drywood termite(2018)
- Macrotermes natalensis, a higher termite (2014
- Order Coleoptera
- Dendroctonus ponderosae Hopkins, beetle (mountain pine beetle) (2013)
- Aquatica lateralis, Japanese aquatic firefly "Heike-botaru" (firefly) (2018)
- Photinus pyralis, Big Dipper firefly (2018)
- Protaetia brevitarsis, White-spotted flower chafer (2019)
- Tribolium castaneum Strain:GA-2, beetle (red flour beetle) (2008)
- Order Diptera
- Family Calliphoridae
- Aldrichina grahami, Forensic blowfly (2020)
- Family Chironomidae
- Dasypogon diadema, Hunting Robber fly (2019)
- Parochlus steinend, Antarctic winged midge (2017)
- Proctacanthus coquilletti, Assassin fly (2017)
- Family Culicidae (mosquitoes)
- Aedes aegypti Strain:LVPib12, mosquito (vector of dengue fever, etc.) (2007)
- Aedes albopictus (2015)
- Anopheles darlingi
- Anopheles gambiae Strain: PEST, mosquito (vector of malaria) (2002)
- Anopheles gambiae Strain: M, mosquito (vector of malaria) (2010)
- Anopheles gambiae Strain: S, mosquito (vector of malaria) (2010))
- Anopheles sinensis, mosquito (vector of vivax malaria, lympahtic filariasis and Setaria infections), (2014)
- Anopheles stephensii
- Anopheles arabiensis (2015)
- Anopheles quadriannulatus (2015)
- Anopheles merus (2015)
- Anopheles melas (2015)
- Anopheles christyi (2015)
- Anopheles epiroticus (2015)
- Anopheles maculatus (2015)
- Anopheles culicifacies (2015)
- Anopheles minimus (2015)
- Anopheles funestus (2015)2019
- Anopheles dirus (2015)
- Anopheles farauti (2015)
- Anopheles atroparvus (2015)
- Anopheles sinensis (2015)
- Anopheles albimanus (2015)
- Culex quinquefasciatus, mosquito (vector of West Nile virus, filariasis etc.) (2010)
- Family Drosophilidae (fruit flies)
- Drosophila albomicans, fruit fly (2012)
- Drosophila ananassae, fruit fly (2007)
- Drosophila biarmipes, fruit fly (2011)
- Drosophila bipectinata, fruit fly (2011)
- Drosophila erecta, fruit fly (2007)
- Drosophila elegans, fruit fly (2011)
- Drosophila eugracilis, fruit fly (2011)
- Drosophila ficusphila, fruit fly (2011)
- Drosophila grimshawi, fruit fly (2007)
- Drosophila kikkawai, fruit fly (2011)
- Drosophila melanogaster, fruit fly (model organism) (2000)
- Drosophila mojavensis, fruit fly (2007)
- Drosophila neotestacea, fruit fly (transcriptome 2014)
- Drosophila persimilis, fruit fly (2007)
- Drosophila pseudoobscura, fruit fly (2005)
- Drosophila rhopaloa, fruit fly (2011)
- Drosophila santomea, fruit fly
- Drosophila sechellia, fruit fly (2007)
- Drosophila simulans, fruit fly (2007)
- Drosophila takahashi, fruit fly (2011)
- Drosophila virilis, fruit fly (2007)
- Drosophila willistoni, fruit fly (2007)
- Drosophila yakuba, fruit fly (2007)
- Family Phoridae
- Megaselia abdita, scuttle fly (transcriptome 2013)
- Family Psychodidae (drain flies)
- Clogmia albipunctata, moth midge (transcriptome 2013)
- Family Sarcophagidae (flesh flies)
- Sarcophaga Bullata, Flesh fly (2019)
- Family Syrphidae (hoverflies)
- Episyrphus balteatus, hoverfly (transcriptome 2011)
- Family Calliphoridae
- Order Hemiptera
- Acyrthosiphon pisum, aphid (pea aphid) (2010)
- Ericerus pela, Chinese wax scale insect (2019)
- Laodelphax striatellus, small brown planthopper (2017)
- Lycorma delicatula, spotted lanternfly (2019)
- Rhodnius prolixus, kissing-bug (2015)
- Rhopalosiphum maidis, Corn leaf aphid (2019)
- Sitobion miscanthi, Indian grain aphid (2019)
- Triatoma rubrofasciata, assassin bug (2019)
- Order Hymenoptera
- Acromyrmex echinatior colony Ae372, ant (Panamanian leafcutter) (2011)
- Apis mellifera, bee (honey bee), (model for eusocial behavior) (2006)
- Atta cephalotes, ant (leaf-cutter ant) (2011)
- Camponotus floridanus, ant (2010)
- Cerapachys biroi, ant (clonal raider ant)(2014)
- Harpegnathos saltator, ant (2010)
- Lasius niger, ant (black garden ant)(2017)
- Linepithema humile, ant (Argentine ant) (2011)
- Nasonia giraulti, wasp (parasitoid wasp) (2010)
- Nasonia longicornis, wasp (parasitoid wasp) (2010)
- Nasonia vitripennis, wasp (parasitoid wasp; model organism) (2010)
- Nomia Melanderi, Alkali bee (2019)
- Pogonomyrmex barbatus, ant (red harvester ant) (2011)
- Solenopsis invicta, ant (fire ant) (2011)
- Order Lepidoptera
- Antharaea yamamai, Japanese oak silk moth (2019)
- Bicyclus anynana, squinting bush brown (2017)
- Bombyx mori Strain:p50T, moth (domestic silk worm) (2004)
- Cydia pomonella, codling moth (2019)
- Danaus plexippus, butterfly (monarch butterfly) (2011)
- Heliconius melpomene, butterfly (2012)
- Melitaea cinxia, Glanville fritillary butterfly (2014)
- Megathymus ursus violae, bear giant skipper butterfly (2018)
- Papilio bianor, Chinese peacock butterfly (2019)
- Pieris rapae, small cabbage white butterfly (2016)
- Plutella xylostella, moth (diamondback moth) (2013)
- Spodoptera frugiperda, Fall armyworm (2017)
- Eudocima phalonia, fruit-piercing moth (2017)
- Order Orthoptera
- Locusta migratoria, migratory locust (2014)
- Schistocerca gregaria, desert locust (2020)
- Order Phthiraptera
- Pediculus humanus, louse (sucking louse; parasite) (2010)
- Order Trichoptera
- Stenopsyche tienmushanensis, Caddisfly (2018)
Crustaceans
- Acartia tonsa dana, cosmopolitan calanoid copepod (2019)
- Daphnia pulex, water flea (2007)
- Eulimnadia Texana, Clam Shrimp (2018)
- Neocaridina denticulata, shrimp (2014)
- Parhyale hawaiensis, amphipod (2016)
- Portunus trituberculatus, swimming crab (2020)
- Procambarus virginalis, marbled crayfish (2018)
- Tigriopus kingsejongensis, antarctic-endemic copepod (2017)
Chelicerates
- Limulus polyphemus, Atlantic horseshoe crab (2014)
- Carcinoscorpius rotundicauda, mangrove horseshoe crab (2020)
Of which Arachnids:
- Acanthoscurria geniculata, Brazilian whiteknee tarantula (2014)
- Dysdera silvatica, Canary Island nocturnal endemic woodlouse spider (2019)
- Ixodes scapularis, (deer tick) (2016)
- Mesobuthus martensii, Chinese scorpion (2013)
- Nephila clavipes, (golden silk orb-weaver) (2017)
- Parasteatoda tepidariorum, (common house spider) (2017)
- Stegodyphus mimosarum, African social velvet spider (2014)
- Tetranychus urticae, spider mite (2011)
- Tropilaelaps mercedesae, (honeybee mite) (2017)
Myriapoda
- Strigamia maritima, centipede
Tardigrades
- Hypsibius dujardini, water bear (2015)
Molluscs
- Achatina fulica, giant African snail (2019)
- Architeuthis dux, giant squid (2020)
- Argopecten purpuratus, peruvian scallop (2018)
- Bathymodiolus platifrons, seep mussel (2017
- Biomphalaria glabrata, a medically-important air-breathing freshwater snail in the family Planorbidae (2017)
- Chlamys farreri, Zhikong scallop (2017)
- Crassostrea gigas, Pacific oyster (2012)
- Dreissena rostriformis, Quagga mussel (2019)
- Euprymna scolopes, Hawaiian bobtail squid (2019)
- Elysia chlorotica, a solar-powered sea slug (2019)
- Haliotis discus hannai, pacific abalone (2017)
- Lottia gigantea, owl limpet (2013)
- Limnoperna fortunei, invasive golden mussel (2017)
- Modiolus philippinarum, shallow water mussel (2017)
- Mytilus galloprovincialis, Mediterranean mussel (2016)
- Octopus bimaculoides, California two-spot octopus (2015)
- Octopus minor, common long-arm octopus (2018
- Octopus vulgaris, common octopus (2019)
- Patinopecten yessoensis, Yesso scallop (2017)
- Pecten maximus, Great scallop (2020)
- Pinctada fucata, Pearl oyster (2012)
- Pomacea canaliculata, golden apple snail (2018)
- Ruditapes philippinarum, Manila clam (2017)
- Saccostrea glomerata, Sydney rock oyster (2018)
- Scapharca broughtonii, Blood clam (2019)
- Venustaconcha ellipsiformis, freshwater mussel (2018)
Platyhelminthes
- Clonorchis sinensis, liver fluke (human pathogen) (draft 2011)
- Echinococcus granulosus, tapeworm (dog pathogen) (2013, 2013)
- Echinococcus multilocularis, tapeworm (2013)
- Hymenolepis microstoma, tapeworm (2013)
- Limnoperna fortunei, golden mussel (2017)
- Schistosoma haematobium, schistosome (human pathogen) (2012 2019)
- Schistosoma japonicum, schistosome (human pathogen) (2009)
- Schistosoma mansoni, schistosome (human pathogen) (2009, 2012)
- Schmidtea mediterranea, planarian (model organism) (2006)
- Taenia solium, tapeworm (2013)
Nematodes
- Ancylostoma ceylanicum, zoonotic hookworm infecting both humans and other mammals (2015)
- Ascaris suum, pig-infecting giant roundworm, closely related to human-infecting giant roundworm Ascaris lumbricoides (2011)
- Brugia malayi (Strain:TRS), human-infecting filarial parasite (2007)
- Bursaphelenchus xylophilus, infects pine trees (2011)
- Caenorhabditis angaria (Strain:PS1010) (2010)
- Caenorhabditis brenneri, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Caenorhabditis briggsae (2003)
- Caenorhabditis elegans (Strain:Bristol N2), model organism (1998)
- Caenorhabditis remanei, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Dirofilaria immitis, dog-infecting filarial parasite (2012)
- Globodera pallida, plant pathogen (2014)
- Haemonchus contortus, blood-feeding parasite infecting sheep and goats (2013)
- Heterodera glycines, soybean cyst nematode (2019)
- Heterorhabditis bacteriophora, (2013)
- Loa loa, human-infecting filarial parasite (2013)
- Meloidogyne hapla, northern root-knot nematode (plant pathogen) (2008)
- Meloidogyne incognita, southern root-knot nematode (plant pathogen) (2008)
- Necator americanus, human-infecting hookworm (2014)
- Onchocerca volvulus, human-infecting filarial parasite
- Pristionchus pacificus, model invertebrate (2008)
- Romanomermis culicivorax, entomopathogenic nematode that invades larvae of various mosquito species (2013)
- Schistosoma haematobium, urinary blood fluke infecting humans (2019)
- Trichuris suis, pig-infecting whipworm (2014)
- Trichuris muris, mouse-infecting whipworm (2014)
- Trichuris trichiura, human-infecting whipworm (2014)
- Wuchereria bancrofti, human-infecting filarial parasite
Annelids
- Capitella teleta, polychaete (2007, 2013)
- Helobdella robusta, leech (2007, 2013)
- Eisenia fetida, earthworm (2015, 2016)
Brachiopoda
- Lingula anatina, brachiopod (2015,)
Rotifera
- Adineta vaga, rotifer (2013,)==Porifera==
- Amphimedon queenslandica, a sponge (2009)
- Stylissa carteri (2016)
- Xestospongia testudinaria (2016)
Ctenophora
- Mnemiopsis leidyi (Ctenophora), (order Lobata) (2012/2013)
- Pleurobrachia bachei (Ctenophora) (2014)
Placozoa
- Trichoplax adhaerens, a Placozoan (2008)
- Hoilungia hongkongensis, nov. gen H13 Placozoan (2018)
Cnidaria
- Hydra vulgaris, (previously Hydra magnipapillata), a model hydrozoan (2010)
- Nematostella vectensis, a model anemone (starlet sea anemone) (2007)
- Aiptasia pallida, a sea anemone (2015)
- Acropora digitifera, a coral (2011)
- Renilla muelleri, an octocoral (2017, 2019)
- Stylophora pistillata, a coral (2017)
- Aurelia aurita, moon jellyfish (2019)
- Clytia hemisphaerica, Hydrozoan jellyfish (2019)
- Pocillopora damicornis, cauliflower coral (2018)
- Nemopilema nomurai, Nomura jellyfish (2019)
- Rhopilema esculentum, Flame jellyfish (2020)
- Cassiopea xamachana (Scyphozoa) (2019)
- Alatina alata (Cubozoa) (2019)
- Calvadosia cruxmelitensis (Staurozoa) (2019)
- Dendronephthya gigantea, an octocoral (2019)
Deuterostomia
Hemichordates
- Saccoglossus kowalevskii, Enteropneusta (2015)
- Ptychodera flava, Enteropneusta (2015)
Echinoderms
- Acanthaster planci, starfish (2014)
- Apostichopus japonicus, sea cucumber (2017)
- Strongylocentrotus purpuratus, a sea urchin and model deuterostome (2006)
Tunicates
- Ciona intestinalis, a tunicate (2002)
- Ciona savignyi, a tunicate (2007)
- Oikopleura dioica, a larvacean (2001).
Cephalochordates
- Branchiostoma floridae, a lancelet (2008)
Cyclostomes
- Petromyzon marinus, a lamprey (2009, 2013)
Cartilaginous fish
- Callorhinchus milii, an elephant shark (2007)
- Rhincodon typus, Whale shark (2017)
- Carcharodon carcharias, Great white shark ( 2018')
- Chiloscyllium punctatum, Brownbanded bamboo shark (2018)
- Scyliorhinus torazame, Cloudy catshark (2018)
Bony fish
- Order Anabantiformes
- Betta splendens, Siamese fighting fish (2018)
- Order Beloniformes
- Oryzias latipes, medaka (2007)
- Order Centrarchiformes
- Oplegnathus fasciatus, barred knifejaw (2019)
- Order Characiformes
- Astyanax mexicanus, Mexican tetra (2014)
- Order Cichliformes
- Oreochromis niloticus, Nile tilapia (2019)
- Metriaclima zeb, Lake Malawi cichlid (2019)
- Order Clupeiformes
- Clupea harengus, Atlantic herring (2020)
- Coilia nasus, Japanese grenadier anchovy (2020)
- Sardina pilchardus, European sardine (2019)
- Order Coelacanthiformes
- Latimeria chalumnae, West Indian Ocean coelacanth and oldest known living lineage of Sarcopterygii (2013)
- Order Cypriniformes
- Anabarilius grahami Regan, Kanglang fish (2018)
- Danio rerio, a zebrafish (2007)
- Heterandria formosa, Least Killifish (2019)
- Oxygymnocypris stewartii,(2019)
- Megalobrama amblycephala, blunt snout bream (2017)
- Order Cyprinodontiformes
- Heterandria formosa, least killifish (2019)
- Xiphophorus maculatus, platyfish (2013)
- Nothobranchius furzeri, turquoise killifish (2015)
- Order Esociformes
- Esox lucius, northern pike (2014)
- Order Gadiformes
- Gadus morhua, Atlantic cod (2011)
- Order Gasterosteiformes
- Gasterosteus aculeatus, three-spined stickleback (2006, 2012)
- Order Gymnotiformes
- Electrophorus electricus, electric eel (2014)
- Order Lepisosteiformes
- Lepisosteus oculatus, spotted gar
- Order Osmeriformes
- Protosalanx hyalocranius, clearhead icefish (2017)
- Order Perciformes
- Channa argus, northern snakehead (2017)
- Dissostichus mawsoni, Antarctic toothfish (2019)
- Eleginops maclovinus, Patagonian robalo (2019)
- Larimichthys crocea, large yellow croaker (2014)
- Lutjanus campechanus, Northern red snapper (2020)
- Parachaenichthys charcoti, Antarctic dragonfish (2017)
- Seriola dumerili, Greater amberjack (2017)
- Sillago sinica, chinese sillago (2018)
- Sparus aurata, gilt-head bream (2018)
- Order Salmoniformes
- Salmo salar, Atlantic salmon (2016)
- Oncorhynchus mykiss, rainbow trout (2014)
- Oncorhynchus tshawytscha, Chinook salmon (2018)
- Order Scorpaeniformes
- Sebastes schlegelii, Black rockfish (2018)
- Order Siluriformes
- Ictalurus punctatus, channel catfish (2016)
- Order Tetraodontiformes
- mola mola, ocean sunfish (2016)
- Takifugu rubripes, a puffer fish (International Fugu Genome Consortium 2002)
- Tetraodon nigroviridis, a puffer fish (2004)
Amphibians
- Ambystoma mexicanum, axolotl (2018)
- Xenopus tropicalis, western clawed frog (2010)
- Nanorana parkeri, High Himalaya frog (2015)
- Oophaga pumilio, Strawberry poison-dart frog (2018)
- Rana [Lithobates] catesbeiana, North American bullfrog (2017)
- Rhinella marina, Cane toad (2018)
- Vibrissaphora ailaonica, Mustache toad (2019)
- Leptobrachium leishanense, Leishan Mustache toad (2019)
Reptiles
- Order Crocodylia
- Alligator mississippiensis, American alligator (2012)
- Alligator sinensis, Chinese alligator (2013, 2014)
- Crocodylus porosus, salt water crocodile (2012)
- Gavialis gangeticus, Indian gharial (2012)
- Order Squamata
- Anolis carolinensis JBL SC #1, green anole lizard (2011)
- Dopasia gracilis, Burmese glass lizard, (2015)
- Emydocephalus ijimae, Ijima's turtle-headed sea snake, (2019)
- Eublepharis macularius, Leopard gecko (2016)
- Hydrophis melanocephalus, slender-necked sea snake, (2019)
- Laticauda colubrina, yellow-lipped sea krait, (2019)
- Laticauda laticaudata, blue-linged sea krait, (2019)
- Ophiophagus hannah, king cobra (2013)
- Pantherophis guttatus, corn snake (2014)
- Pogona vitticeps, Australian dragon lizard (2015)
- Python molurus bivittatus, Burmese python (2013)
- Salvator Merinae, tegu lizard (2018)
- Shinisaurus crocodilurus, Chinese crocodile lizard, (2017)
- Order Testudines (Chelonii)
- Chelonia mydas, green sea turtle (2013)
- Chrysemys picta bellii, western painted turtle (2013)
- Pelodiscus sinensis, soft-shelled turtle (2013)
- Platysternon megacephalum, Big-headed turtle (2019)
Birds
- Order Accipitriformes
- Haliaeetus albicilla, white-tailed eagle (2014)
- Haliaeetus leucocephalus, bald eagle (2014)
- Aegypius monachus, cinereous vulture (2015)
- Aquila chrysaetos, golden eagle (2018)
- Order Anseriformes
- Anas platyrhynchos, mallard duck (or wild duck) (2013)
- Order Apodiformes
- Chaetura pelagica, chimney swift (2014)
- Order Bucerotiformes
- Buceros rhinoceros silvestris, rhinoceros hornbill (2014)
- Order Caprimulgiformes
- Order Cariamiformes
- Cariama cristata, red-legged seriema (2014)
- Order Cathartiformes
- Cathartes aura, turkey vulture (2014)
- Order Charadriiformes
- Charadrius vociferus, killdeer (2014)
- Himantopus novaezelandiae, kakī/black stilt (2019)
- Himantopus himantopus, pied stilt (2019)
- Recurvirostra avosetta, pied avocet (2019)
- Order Ciconiiformes
- Nipponia nippon, crested ibis (2014)
- Order Coliiformes
- Colius striatus, speckled mousebird (2014)
- Order Columbiformes
- Columba livia, pigeon (2014)
- Order Coraciiformes
- Merops nubicus, carmine bee-eater (2014)
- Order Cuculiformes
- Cuculus canorus, common cuckoo (2014)
- Tauraco erythrolophus, red-crested turaco (2014)
- Order Eurypygiformes
- Eurypyga helias, sunbittern (2014)
- Order Falconiformes
- Falco cherrug, saker falcon (2013)
- Falco peregrinus, peregrine falcon (2013)
- Order Galliformes
- Arborophila rufipectus, Sichuan Partridge (2019)
- Gallus gallus, chicken (2004)
- Meleagris gallopavo, domesticated turkey (2011)
- Numida meleagris, helmeted guinea fowl (2019)
- Pavo cristatus, Indian peafowl (2018)
- Phasianus colchicus, Common Pheasant (2019)
- Syrmaticus mikado, mikado pheasant (2018)
- Tetrao tetrix, black grouse (2014)
- Order Gaviiformes
- Gavia stellata, red-throated loon (2014)
- Order Gruiformes
- Order Leptosomiformes
- Leptosomus discolor, cuckoo-roller (2014)
- Order Mesitornithiformes
- Mesitornis unicolor, brown mesite (2014)
- Order Opisthocomiformes
- Opisthocomus hoazin, hoatzin (2014)
- Order Passeriformes
- Acanthisitta chloris, rifleman (2014)
- Corvus brachyrhynchos, American crow (2014)
- Corvus hawaiiensis, Hawaiian crow (2018)
- Eopsaltria australis, Eastern yellow robin (2019)
- Ficedula albicollis, collared flycatcher (2012)
- Ficedula hypoleuca, pied flycatcher (2012)
- Geospiza fortis, medium ground-finch (2014)
- Hirundo rustica, barn swallow (2018)
- Lonchura striata domestica, Society finch (2018)
- Manacus vitellinus, golden-collared manakin (2014)
- Lycocorax pyrrhopterus, Paradise-crow (2019)
- Manacus vitellinus, golden-collared manakin (2014)
- Paradisaea rubra, red bird-of-paradise (2019)
- Pteridophora alberti, king of saxony bird-of-paradise (2019)
- Ptiloris paradiseus, paradise riflebird (2019)
- Taeniopygia guttata, zebra finch (2010)
- Order Pelecaniformes
- Egretta garzetta, little egret (2014)
- Pelecanus crispus, Dalmatian pelican (2014)
- Order Phaethontiformes
- Order Phoenicopteriformes
- Phoenicopterus ruber ruber, American flamingo (2014)
- Order Piciformes
- Picoides pubescens, downy woodpecker (2014)
- Order Podicipediformes
- Order Procellariiformes
- Fulmarus glacialis, northern fulmar (2014)
- Order Pterocliformes
- Pterocles gutturalis, yellow-throated sandgrouse (2014)
- Order Psittaciformes
- Amazona leucocephala, Cuban amazon (2019)
- Amazona ventralis, Hispaniolan amanzon (2019)
- Amazona vittata, Puerto Rican parrot (2012)
- Ara macao, Scarlet macaw (2013)
- Cyanoramphus malherbi, kākāriki karaka (2020)
- Melopsittacus undulatus, budgerigar (2014)
- Nestor notabilis, kea (2014)
- Order Struthioniformes
- Struthio camelus australis, common ostrich (2014)
- Order Sphenisciformes
- Aptenodytes forsteri, emperor penguin (2014)
- Aptenodytes patagonicus, king penguin (2019)
- Eudyptes chrysocome, Western rockhopper penguin (2019)
- Eudyptes chrysolophus chrysolophus, Macaroni penguin (2019)
- Eudyptes chrysolophus schlegeli, Royal penguin (2019)
- Eudyptes filholi, Eastern rockhopper penguin (2019)
- Eudyptes moseleyi, Northern rockhopper penguin (2019)
- Eudyptes pachyrhynchus, Fiordland-crested penguin (2019)
- Eudyptes robustus, Snares-crested penguin (2019)
- Eudyptes sclateri, Erect-crested penguin (2019)
- Eudyptula minor albosignata, white-flippered penguin (2019)
- Eudyptula minor minor, little blue penguin (2019)
- Eudyptula novaehollandiae, fairy penguin (2019)
- Megadyptes antipodes antipodes, yellow eyed penguin or hoiho (2019)
- Pygoscelis adeliae, Adélie penguin (2014)
- Pygoscelis antarctica, chinstrap penguin (2019)
- Pygoscelis papua, gentoo penguin (2019)
- Spheniscus demersus, African penguin (2019)
- Spheniscus humboldti, Humboldt penguin (2019)
- Spheniscus magellanicus, Magellanic penguin (2019)
- Spheniscus mendiculus, Galápagos penguin (2019)
- Order Strigiformes
- Tyto alba, barn owl (2014)
- Strix occidentalis caurina, northern spotted owl (2017)
- Strix varia, Barred owl (2017)
- Order Suliformes
- Phalacrocorax auritus, double-crested cormorant (2017)
- Phalacrocorax brasilianus, Neotropic cormorant (2017)
- Phalacrocorax carbo, great cormorant (2014)
- Phalacrocorax harrisi, Galapagos cormorant (2017)
- Phalacrocorax pelagicus, pelagic cormorant (2017)
- Order Tinamiformes
- Tinamus guttatus, white-throated tinamou (2014)
- Order Trochiliformes
- Calypte anna, Anna's hummingbird (2014)
- Order Trogoniformes
- Apaloderma vittatum, bar-tailed trogon (2014)
Mammals
- Subclass Prototheria, Order Monotremata, Family Ornithorhynchidae
- Ornithorhynchus anatinus, platypus (2007)
- Subclass Theria (marsupials and placental mammals)
- Infraclass Metatheria (marsupials)
- Order Didelphimorphia, Family Didelphidae (opossums)
- Monodelphis domestica, gray short-tailed opossum (2007)
- Order Dasyuromorphia
- Order Diprotodontia
- Family Macropodidae
- Macropus eugenii, tammar wallaby (2011)
- Family Phascolarctidae
- Phascolarctos cinereus, koala (2013 draft)
- Infraclass Eutheria (placental mammals)
- Family Macropodidae
- Order Didelphimorphia, Family Didelphidae (opossums)
- Infraclass Metatheria (marsupials)
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- Order Erinaceomorpha, Family Erinaceidae
- Erinaceus europaeus, western European hedgehog
- Order Eulipotyphla, Family Solenodontidae
- Order Chiroptera
- Family Megadermatidae
- Megaderma lyra, greater false vampire bat (2013)
- Family Mormoopidae
- Pteronotus parnellii, Parnell's mustached bat (2013)
- Family Pteropodidae
- Pteropus vampyrus, fruit bat (2012)
- Eidolon helvum, Old World fruit bat (2013)
- Family Rhinolophidae
- Family Vespertilionidae
- Myotis lucifugus, little brown bat (2010)
- Family Phyllostomidae
- Leptonycteris yerbabuenae, long nosed bat (2020)
- Leptonycteris nivalis, greater long nosed bat (2020)
- Musonycteris harrisoni, banana bat (2020)
- Artibeus jamaicensis, Jamaican fruit bat (2020)
- Macrotus waterhousii, Waterhouse's leaf-nosed bat (2020)
- Family Megadermatidae
- Order Primates
- Order Erinaceomorpha, Family Erinaceidae
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- Family Cercopithecidae
- Macaca mulatta, rhesus macaque (2007 & Chinese rhesus macaque Macaca mulatta lasiota in 2011)
- Macaca fascicularis, Cynomolgus or crab-eating macaque (2011)
- Rhinopithecus roxellana, golden snub-nosed monkey (2019)
- Family Hominidae
- Subfamily Ponginae
- Pongo pygmaeus/Pongo abelii, orangutan (Borneo/Sumatra) (2011)
- Subfamily Homininae
- Gorilla gorilla, western gorilla (2012)
- Homo sapiens, modern human (draft 2001 91%-96% complete)
- Homo neanderthalensis, Neanderthal (draft 2010)
- Pan troglodytes, chimpanzee (2005)
- Pan paniscus, bonobo (2012)
- Subfamily Ponginae
- Family Cercopithecidae
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Strain: C57BL/6J, mouse (2002)
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- Rattus norvegicus, rat (2004)
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- Order Lagomorpha
- Family Leporidae
- Oryctolagus cuniculus, European rabbit (2010)
- Family Leporidae
- Order Lagomorpha
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Protostomia
Insects
- Order Blattodea
- Blattella germanica, German cockroach (2018)
- Periplaneta americana, American cockroach (2018)
- Zootermopsis nevadensis, a dampwood termite (2014
- Cryptotermes secundus, a drywood termite(2018)
- Macrotermes natalensis, a higher termite (2014
- Order Coleoptera
- Dendroctonus ponderosae Hopkins, beetle (mountain pine beetle) (2013)
- Aquatica lateralis, Japanese aquatic firefly "Heike-botaru" (firefly) (2018)
- Photinus pyralis, Big Dipper firefly (2018)
- Protaetia brevitarsis, White-spotted flower chafer (2019)
- Tribolium castaneum Strain:GA-2, beetle (red flour beetle) (2008)
- Order Diptera
- Family Calliphoridae
- Aldrichina grahami, Forensic blowfly (2020)
- Family Chironomidae
- Dasypogon diadema, Hunting Robber fly (2019)
- Parochlus steinend, Antarctic winged midge (2017)
- Proctacanthus coquilletti, Assassin fly (2017)
- Family Culicidae (mosquitoes)
- Aedes aegypti Strain:LVPib12, mosquito (vector of dengue fever, etc.) (2007)
- Aedes albopictus (2015)
- Anopheles darlingi
- Anopheles gambiae Strain: PEST, mosquito (vector of malaria) (2002)
- Anopheles gambiae Strain: M, mosquito (vector of malaria) (2010)
- Anopheles gambiae Strain: S, mosquito (vector of malaria) (2010))
- Anopheles sinensis, mosquito (vector of vivax malaria, lympahtic filariasis and Setaria infections), (2014)
- Anopheles stephensii
- Anopheles arabiensis (2015)
- Anopheles quadriannulatus (2015)
- Anopheles merus (2015)
- Anopheles melas (2015)
- Anopheles christyi (2015)
- Anopheles epiroticus (2015)
- Anopheles maculatus (2015)
- Anopheles culicifacies (2015)
- Anopheles minimus (2015)
- Anopheles funestus (2015)2019
- Anopheles dirus (2015)
- Anopheles farauti (2015)
- Anopheles atroparvus (2015)
- Anopheles sinensis (2015)
- Anopheles albimanus (2015)
- Culex quinquefasciatus, mosquito (vector of West Nile virus, filariasis etc.) (2010)
- Family Drosophilidae (fruit flies)
- Drosophila albomicans, fruit fly (2012)
- Drosophila ananassae, fruit fly (2007)
- Drosophila biarmipes, fruit fly (2011)
- Drosophila bipectinata, fruit fly (2011)
- Drosophila erecta, fruit fly (2007)
- Drosophila elegans, fruit fly (2011)
- Drosophila eugracilis, fruit fly (2011)
- Drosophila ficusphila, fruit fly (2011)
- Drosophila grimshawi, fruit fly (2007)
- Drosophila kikkawai, fruit fly (2011)
- Drosophila melanogaster, fruit fly (model organism) (2000)
- Drosophila mojavensis, fruit fly (2007)
- Drosophila neotestacea, fruit fly (transcriptome 2014)
- Drosophila persimilis, fruit fly (2007)
- Drosophila pseudoobscura, fruit fly (2005)
- Drosophila rhopaloa, fruit fly (2011)
- Drosophila santomea, fruit fly
- Drosophila sechellia, fruit fly (2007)
- Drosophila simulans, fruit fly (2007)
- Drosophila takahashi, fruit fly (2011)
- Drosophila virilis, fruit fly (2007)
- Drosophila willistoni, fruit fly (2007)
- Drosophila yakuba, fruit fly (2007)
- Family Phoridae
- Megaselia abdita, scuttle fly (transcriptome 2013)
- Family Psychodidae (drain flies)
- Clogmia albipunctata, moth midge (transcriptome 2013)
- Family Sarcophagidae (flesh flies)
- Sarcophaga Bullata, Flesh fly (2019)
- Family Syrphidae (hoverflies)
- Episyrphus balteatus, hoverfly (transcriptome 2011)
- Family Calliphoridae
- Order Hemiptera
- Acyrthosiphon pisum, aphid (pea aphid) (2010)
- Ericerus pela, Chinese wax scale insect (2019)
- Laodelphax striatellus, small brown planthopper (2017)
- Lycorma delicatula, spotted lanternfly (2019)
- Rhodnius prolixus, kissing-bug (2015)
- Rhopalosiphum maidis, Corn leaf aphid (2019)
- Sitobion miscanthi, Indian grain aphid (2019)
- Triatoma rubrofasciata, assassin bug (2019)
- Order Hymenoptera
- Acromyrmex echinatior colony Ae372, ant (Panamanian leafcutter) (2011)
- Apis mellifera, bee (honey bee), (model for eusocial behavior) (2006)
- Atta cephalotes, ant (leaf-cutter ant) (2011)
- Camponotus floridanus, ant (2010)
- Cerapachys biroi, ant (clonal raider ant)(2014)
- Harpegnathos saltator, ant (2010)
- Lasius niger, ant (black garden ant)(2017)
- Linepithema humile, ant (Argentine ant) (2011)
- Nasonia giraulti, wasp (parasitoid wasp) (2010)
- Nasonia longicornis, wasp (parasitoid wasp) (2010)
- Nasonia vitripennis, wasp (parasitoid wasp; model organism) (2010)
- Nomia Melanderi, Alkali bee (2019)
- Pogonomyrmex barbatus, ant (red harvester ant) (2011)
- Solenopsis invicta, ant (fire ant) (2011)
- Order Lepidoptera
- Antharaea yamamai, Japanese oak silk moth (2019)
- Bicyclus anynana, squinting bush brown (2017)
- Bombyx mori Strain:p50T, moth (domestic silk worm) (2004)
- Cydia pomonella, codling moth (2019)
- Danaus plexippus, butterfly (monarch butterfly) (2011)
- Heliconius melpomene, butterfly (2012)
- Melitaea cinxia, Glanville fritillary butterfly (2014)
- Megathymus ursus violae, bear giant skipper butterfly (2018)
- Papilio bianor, Chinese peacock butterfly (2019)
- Pieris rapae, small cabbage white butterfly (2016)
- Plutella xylostella, moth (diamondback moth) (2013)
- Spodoptera frugiperda, Fall armyworm (2017)
- Eudocima phalonia, fruit-piercing moth (2017)
- Order Orthoptera
- Locusta migratoria, migratory locust (2014)
- Schistocerca gregaria, desert locust (2020)
- Order Phthiraptera
- Pediculus humanus, louse (sucking louse; parasite) (2010)
- Order Trichoptera
- Stenopsyche tienmushanensis, Caddisfly (2018)
Crustaceans
- Acartia tonsa dana, cosmopolitan calanoid copepod (2019)
- Daphnia pulex, water flea (2007)
- Eulimnadia Texana, Clam Shrimp (2018)
- Neocaridina denticulata, shrimp (2014)
- Parhyale hawaiensis, amphipod (2016)
- Portunus trituberculatus, swimming crab (2020)
- Procambarus virginalis, marbled crayfish (2018)
- Tigriopus kingsejongensis, antarctic-endemic copepod (2017)
Chelicerates
- Limulus polyphemus, Atlantic horseshoe crab (2014)
- Carcinoscorpius rotundicauda, mangrove horseshoe crab (2020)
Of which Arachnids:
- Acanthoscurria geniculata, Brazilian whiteknee tarantula (2014)
- Dysdera silvatica, Canary Island nocturnal endemic woodlouse spider (2019)
- Ixodes scapularis, (deer tick) (2016)
- Mesobuthus martensii, Chinese scorpion (2013)
- Nephila clavipes, (golden silk orb-weaver) (2017)
- Parasteatoda tepidariorum, (common house spider) (2017)
- Stegodyphus mimosarum, African social velvet spider (2014)
- Tetranychus urticae, spider mite (2011)
- Tropilaelaps mercedesae, (honeybee mite) (2017)
Myriapoda
- Strigamia maritima, centipede
Tardigrades
- Hypsibius dujardini, water bear (2015)
Molluscs
- Achatina fulica, giant African snail (2019)
- Architeuthis dux, giant squid (2020)
- Argopecten purpuratus, peruvian scallop (2018)
- Bathymodiolus platifrons, seep mussel (2017
- Biomphalaria glabrata, a medically-important air-breathing freshwater snail in the family Planorbidae (2017)
- Chlamys farreri, Zhikong scallop (2017)
- Crassostrea gigas, Pacific oyster (2012)
- Dreissena rostriformis, Quagga mussel (2019)
- Euprymna scolopes, Hawaiian bobtail squid (2019)
- Elysia chlorotica, a solar-powered sea slug (2019)
- Haliotis discus hannai, pacific abalone (2017)
- Lottia gigantea, owl limpet (2013)
- Limnoperna fortunei, invasive golden mussel (2017)
- Modiolus philippinarum, shallow water mussel (2017)
- Mytilus galloprovincialis, Mediterranean mussel (2016)
- Octopus bimaculoides, California two-spot octopus (2015)
- Octopus minor, common long-arm octopus (2018
- Octopus vulgaris, common octopus (2019)
- Patinopecten yessoensis, Yesso scallop (2017)
- Pecten maximus, Great scallop (2020)
- Pinctada fucata, Pearl oyster (2012)
- Pomacea canaliculata, golden apple snail (2018)
- Ruditapes philippinarum, Manila clam (2017)
- Saccostrea glomerata, Sydney rock oyster (2018)
- Scapharca broughtonii, Blood clam (2019)
- Venustaconcha ellipsiformis, freshwater mussel (2018)
Platyhelminthes
- Clonorchis sinensis, liver fluke (human pathogen) (draft 2011)
- Echinococcus granulosus, tapeworm (dog pathogen) (2013, 2013)
- Echinococcus multilocularis, tapeworm (2013)
- Hymenolepis microstoma, tapeworm (2013)
- Limnoperna fortunei, golden mussel (2017)
- Schistosoma haematobium, schistosome (human pathogen) (2012 2019)
- Schistosoma japonicum, schistosome (human pathogen) (2009)
- Schistosoma mansoni, schistosome (human pathogen) (2009, 2012)
- Schmidtea mediterranea, planarian (model organism) (2006)
- Taenia solium, tapeworm (2013)
Nematodes
- Ancylostoma ceylanicum, zoonotic hookworm infecting both humans and other mammals (2015)
- Ascaris suum, pig-infecting giant roundworm, closely related to human-infecting giant roundworm Ascaris lumbricoides (2011)
- Brugia malayi (Strain:TRS), human-infecting filarial parasite (2007)
- Bursaphelenchus xylophilus, infects pine trees (2011)
- Caenorhabditis angaria (Strain:PS1010) (2010)
- Caenorhabditis brenneri, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Caenorhabditis briggsae (2003)
- Caenorhabditis elegans (Strain:Bristol N2), model organism (1998)
- Caenorhabditis remanei, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Dirofilaria immitis, dog-infecting filarial parasite (2012)
- Globodera pallida, plant pathogen (2014)
- Haemonchus contortus, blood-feeding parasite infecting sheep and goats (2013)
- Heterodera glycines, soybean cyst nematode (2019)
- Heterorhabditis bacteriophora, (2013)
- Loa loa, human-infecting filarial parasite (2013)
- Meloidogyne hapla, northern root-knot nematode (plant pathogen) (2008)
- Meloidogyne incognita, southern root-knot nematode (plant pathogen) (2008)
- Necator americanus, human-infecting hookworm (2014)
- Onchocerca volvulus, human-infecting filarial parasite
- Pristionchus pacificus, model invertebrate (2008)
- Romanomermis culicivorax, entomopathogenic nematode that invades larvae of various mosquito species (2013)
- Schistosoma haematobium, urinary blood fluke infecting humans (2019)
- Trichuris suis, pig-infecting whipworm (2014)
- Trichuris muris, mouse-infecting whipworm (2014)
- Trichuris trichiura, human-infecting whipworm (2014)
- Wuchereria bancrofti, human-infecting filarial parasite
Annelids
- Capitella teleta, polychaete (2007, 2013)
- Helobdella robusta, leech (2007, 2013)
- Eisenia fetida, earthworm (2015, 2016)
Brachiopoda
- Lingula anatina, brachiopod (2015,)
Rotifera
- Adineta vaga, rotifer (2013,)==Porifera==
- Amphimedon queenslandica, a sponge (2009)
- Stylissa carteri (2016)
- Xestospongia testudinaria (2016)
Ctenophora
- Mnemiopsis leidyi (Ctenophora), (order Lobata) (2012/2013)
- Pleurobrachia bachei (Ctenophora) (2014)
Placozoa
- Trichoplax adhaerens, a Placozoan (2008)
- Hoilungia hongkongensis, nov. gen H13 Placozoan (2018)
Cnidaria
- Hydra vulgaris, (previously Hydra magnipapillata), a model hydrozoan (2010)
- Nematostella vectensis, a model anemone (starlet sea anemone) (2007)
- Aiptasia pallida, a sea anemone (2015)
- Acropora digitifera, a coral (2011)
- Renilla muelleri, an octocoral (2017, 2019)
- Stylophora pistillata, a coral (2017)
- Aurelia aurita, moon jellyfish (2019)
- Clytia hemisphaerica, Hydrozoan jellyfish (2019)
- Pocillopora damicornis, cauliflower coral (2018)
- Nemopilema nomurai, Nomura jellyfish (2019)
- Rhopilema esculentum, Flame jellyfish (2020)
- Cassiopea xamachana (Scyphozoa) (2019)
- Alatina alata (Cubozoa) (2019)
- Calvadosia cruxmelitensis (Staurozoa) (2019)
- Dendronephthya gigantea, an octocoral (2019)
Deuterostomia
Hemichordates
- Saccoglossus kowalevskii, Enteropneusta (2015)
- Ptychodera flava, Enteropneusta (2015)
Echinoderms
- Acanthaster planci, starfish (2014)
- Apostichopus japonicus, sea cucumber (2017)
- Strongylocentrotus purpuratus, a sea urchin and model deuterostome (2006)
Tunicates
- Ciona intestinalis, a tunicate (2002)
- Ciona savignyi, a tunicate (2007)
- Oikopleura dioica, a larvacean (2001).
Cephalochordates
- Branchiostoma floridae, a lancelet (2008)
Cyclostomes
- Petromyzon marinus, a lamprey (2009, 2013)
Cartilaginous fish
- Callorhinchus milii, an elephant shark (2007)
- Rhincodon typus, Whale shark (2017)
- Carcharodon carcharias, Great white shark ( 2018')
- Chiloscyllium punctatum, Brownbanded bamboo shark (2018)
- Scyliorhinus torazame, Cloudy catshark (2018)
Bony fish
- Order Anabantiformes
- Betta splendens, Siamese fighting fish (2018)
- Order Beloniformes
- Oryzias latipes, medaka (2007)
- Order Centrarchiformes
- Oplegnathus fasciatus, barred knifejaw (2019)
- Order Characiformes
- Astyanax mexicanus, Mexican tetra (2014)
- Order Cichliformes
- Oreochromis niloticus, Nile tilapia (2019)
- Metriaclima zeb, Lake Malawi cichlid (2019)
- Order Clupeiformes
- Clupea harengus, Atlantic herring (2020)
- Coilia nasus, Japanese grenadier anchovy (2020)
- Sardina pilchardus, European sardine (2019)
- Order Coelacanthiformes
- Latimeria chalumnae, West Indian Ocean coelacanth and oldest known living lineage of Sarcopterygii (2013)
- Order Cypriniformes
- Anabarilius grahami Regan, Kanglang fish (2018)
- Danio rerio, a zebrafish (2007)
- Heterandria formosa, Least Killifish (2019)
- Oxygymnocypris stewartii,(2019)
- Megalobrama amblycephala, blunt snout bream (2017)
- Order Cyprinodontiformes
- Heterandria formosa, least killifish (2019)
- Xiphophorus maculatus, platyfish (2013)
- Nothobranchius furzeri, turquoise killifish (2015)
- Order Esociformes
- Esox lucius, northern pike (2014)
- Order Gadiformes
- Gadus morhua, Atlantic cod (2011)
- Order Gasterosteiformes
- Gasterosteus aculeatus, three-spined stickleback (2006, 2012)
- Order Gymnotiformes
- Electrophorus electricus, electric eel (2014)
- Order Lepisosteiformes
- Lepisosteus oculatus, spotted gar
- Order Osmeriformes
- Protosalanx hyalocranius, clearhead icefish (2017)
- Order Perciformes
- Channa argus, northern snakehead (2017)
- Dissostichus mawsoni, Antarctic toothfish (2019)
- Eleginops maclovinus, Patagonian robalo (2019)
- Larimichthys crocea, large yellow croaker (2014)
- Lutjanus campechanus, Northern red snapper (2020)
- Parachaenichthys charcoti, Antarctic dragonfish (2017)
- Seriola dumerili, Greater amberjack (2017)
- Sillago sinica, chinese sillago (2018)
- Sparus aurata, gilt-head bream (2018)
- Order Salmoniformes
- Salmo salar, Atlantic salmon (2016)
- Oncorhynchus mykiss, rainbow trout (2014)
- Oncorhynchus tshawytscha, Chinook salmon (2018)
- Order Scorpaeniformes
- Sebastes schlegelii, Black rockfish (2018)
- Order Siluriformes
- Ictalurus punctatus, channel catfish (2016)
- Order Tetraodontiformes
- mola mola, ocean sunfish (2016)
- Takifugu rubripes, a puffer fish (International Fugu Genome Consortium 2002)
- Tetraodon nigroviridis, a puffer fish (2004)
Amphibians
- Ambystoma mexicanum, axolotl (2018)
- Xenopus tropicalis, western clawed frog (2010)
- Nanorana parkeri, High Himalaya frog (2015)
- Oophaga pumilio, Strawberry poison-dart frog (2018)
- Rana [Lithobates] catesbeiana, North American bullfrog (2017)
- Rhinella marina, Cane toad (2018)
- Vibrissaphora ailaonica, Mustache toad (2019)
- Leptobrachium leishanense, Leishan Mustache toad (2019)
Reptiles
- Order Crocodylia
- Alligator mississippiensis, American alligator (2012)
- Alligator sinensis, Chinese alligator (2013, 2014)
- Crocodylus porosus, salt water crocodile (2012)
- Gavialis gangeticus, Indian gharial (2012)
- Order Squamata
- Anolis carolinensis JBL SC #1, green anole lizard (2011)
- Dopasia gracilis, Burmese glass lizard, (2015)
- Emydocephalus ijimae, Ijima's turtle-headed sea snake, (2019)
- Eublepharis macularius, Leopard gecko (2016)
- Hydrophis melanocephalus, slender-necked sea snake, (2019)
- Laticauda colubrina, yellow-lipped sea krait, (2019)
- Laticauda laticaudata, blue-linged sea krait, (2019)
- Ophiophagus hannah, king cobra (2013)
- Pantherophis guttatus, corn snake (2014)
- Pogona vitticeps, Australian dragon lizard (2015)
- Python molurus bivittatus, Burmese python (2013)
- Salvator Merinae, tegu lizard (2018)
- Shinisaurus crocodilurus, Chinese crocodile lizard, (2017)
- Order Testudines (Chelonii)
- Chelonia mydas, green sea turtle (2013)
- Chrysemys picta bellii, western painted turtle (2013)
- Pelodiscus sinensis, soft-shelled turtle (2013)
- Platysternon megacephalum, Big-headed turtle (2019)
Birds
- Order Accipitriformes
- Haliaeetus albicilla, white-tailed eagle (2014)
- Haliaeetus leucocephalus, bald eagle (2014)
- Aegypius monachus, cinereous vulture (2015)
- Aquila chrysaetos, golden eagle (2018)
- Order Anseriformes
- Anas platyrhynchos, mallard duck (or wild duck) (2013)
- Order Apodiformes
- Chaetura pelagica, chimney swift (2014)
- Order Bucerotiformes
- Buceros rhinoceros silvestris, rhinoceros hornbill (2014)
- Order Caprimulgiformes
- Order Cariamiformes
- Cariama cristata, red-legged seriema (2014)
- Order Cathartiformes
- Cathartes aura, turkey vulture (2014)
- Order Charadriiformes
- Charadrius vociferus, killdeer (2014)
- Himantopus novaezelandiae, kakī/black stilt (2019)
- Himantopus himantopus, pied stilt (2019)
- Recurvirostra avosetta, pied avocet (2019)
- Order Ciconiiformes
- Nipponia nippon, crested ibis (2014)
- Order Coliiformes
- Colius striatus, speckled mousebird (2014)
- Order Columbiformes
- Columba livia, pigeon (2014)
- Order Coraciiformes
- Merops nubicus, carmine bee-eater (2014)
- Order Cuculiformes
- Cuculus canorus, common cuckoo (2014)
- Tauraco erythrolophus, red-crested turaco (2014)
- Order Eurypygiformes
- Eurypyga helias, sunbittern (2014)
- Order Falconiformes
- Falco cherrug, saker falcon (2013)
- Falco peregrinus, peregrine falcon (2013)
- Order Galliformes
- Arborophila rufipectus, Sichuan Partridge (2019)
- Gallus gallus, chicken (2004)
- Meleagris gallopavo, domesticated turkey (2011)
- Numida meleagris, helmeted guinea fowl (2019)
- Pavo cristatus, Indian peafowl (2018)
- Phasianus colchicus, Common Pheasant (2019)
- Syrmaticus mikado, mikado pheasant (2018)
- Tetrao tetrix, black grouse (2014)
- Order Gaviiformes
- Gavia stellata, red-throated loon (2014)
- Order Gruiformes
- Order Leptosomiformes
- Leptosomus discolor, cuckoo-roller (2014)
- Order Mesitornithiformes
- Mesitornis unicolor, brown mesite (2014)
- Order Opisthocomiformes
- Opisthocomus hoazin, hoatzin (2014)
- Order Passeriformes
- Acanthisitta chloris, rifleman (2014)
- Corvus brachyrhynchos, American crow (2014)
- Corvus hawaiiensis, Hawaiian crow (2018)
- Eopsaltria australis, Eastern yellow robin (2019)
- Ficedula albicollis, collared flycatcher (2012)
- Ficedula hypoleuca, pied flycatcher (2012)
- Geospiza fortis, medium ground-finch (2014)
- Hirundo rustica, barn swallow (2018)
- Lonchura striata domestica, Society finch (2018)
- Manacus vitellinus, golden-collared manakin (2014)
- Lycocorax pyrrhopterus, Paradise-crow (2019)
- Manacus vitellinus, golden-collared manakin (2014)
- Paradisaea rubra, red bird-of-paradise (2019)
- Pteridophora alberti, king of saxony bird-of-paradise (2019)
- Ptiloris paradiseus, paradise riflebird (2019)
- Taeniopygia guttata, zebra finch (2010)
- Order Pelecaniformes
- Egretta garzetta, little egret (2014)
- Pelecanus crispus, Dalmatian pelican (2014)
- Order Phaethontiformes
- Order Phoenicopteriformes
- Phoenicopterus ruber ruber, American flamingo (2014)
- Order Piciformes
- Picoides pubescens, downy woodpecker (2014)
- Order Podicipediformes
- Order Procellariiformes
- Fulmarus glacialis, northern fulmar (2014)
- Order Pterocliformes
- Pterocles gutturalis, yellow-throated sandgrouse (2014)
- Order Psittaciformes
- Amazona leucocephala, Cuban amazon (2019)
- Amazona ventralis, Hispaniolan amanzon (2019)
- Amazona vittata, Puerto Rican parrot (2012)
- Ara macao, Scarlet macaw (2013)
- Cyanoramphus malherbi, kākāriki karaka (2020)
- Melopsittacus undulatus, budgerigar (2014)
- Nestor notabilis, kea (2014)
- Order Struthioniformes
- Struthio camelus australis, common ostrich (2014)
- Order Sphenisciformes
- Aptenodytes forsteri, emperor penguin (2014)
- Aptenodytes patagonicus, king penguin (2019)
- Eudyptes chrysocome, Western rockhopper penguin (2019)
- Eudyptes chrysolophus chrysolophus, Macaroni penguin (2019)
- Eudyptes chrysolophus schlegeli, Royal penguin (2019)
- Eudyptes filholi, Eastern rockhopper penguin (2019)
- Eudyptes moseleyi, Northern rockhopper penguin (2019)
- Eudyptes pachyrhynchus, Fiordland-crested penguin (2019)
- Eudyptes robustus, Snares-crested penguin (2019)
- Eudyptes sclateri, Erect-crested penguin (2019)
- Eudyptula minor albosignata, white-flippered penguin (2019)
- Eudyptula minor minor, little blue penguin (2019)
- Eudyptula novaehollandiae, fairy penguin (2019)
- Megadyptes antipodes antipodes, yellow eyed penguin or hoiho (2019)
- Pygoscelis adeliae, Adélie penguin (2014)
- Pygoscelis antarctica, chinstrap penguin (2019)
- Pygoscelis papua, gentoo penguin (2019)
- Spheniscus demersus, African penguin (2019)
- Spheniscus humboldti, Humboldt penguin (2019)
- Spheniscus magellanicus, Magellanic penguin (2019)
- Spheniscus mendiculus, Galápagos penguin (2019)
- Order Strigiformes
- Tyto alba, barn owl (2014)
- Strix occidentalis caurina, northern spotted owl (2017)
- Strix varia, Barred owl (2017)
- Order Suliformes
- Phalacrocorax auritus, double-crested cormorant (2017)
- Phalacrocorax brasilianus, Neotropic cormorant (2017)
- Phalacrocorax carbo, great cormorant (2014)
- Phalacrocorax harrisi, Galapagos cormorant (2017)
- Phalacrocorax pelagicus, pelagic cormorant (2017)
- Order Tinamiformes
- Tinamus guttatus, white-throated tinamou (2014)
- Order Trochiliformes
- Calypte anna, Anna's hummingbird (2014)
- Order Trogoniformes
- Apaloderma vittatum, bar-tailed trogon (2014)
Mammals
- Subclass Prototheria, Order Monotremata, Family Ornithorhynchidae
- Ornithorhynchus anatinus, platypus (2007)
- Subclass Theria (marsupials and placental mammals)
- Infraclass Metatheria (marsupials)
- Order Didelphimorphia, Family Didelphidae (opossums)
- Monodelphis domestica, gray short-tailed opossum (2007)
- Order Dasyuromorphia
- Order Diprotodontia
- Family Macropodidae
- Macropus eugenii, tammar wallaby (2011)
- Family Phascolarctidae
- Phascolarctos cinereus, koala (2013 draft)
- Infraclass Eutheria (placental mammals)
- Family Macropodidae
- Order Didelphimorphia, Family Didelphidae (opossums)
- Infraclass Metatheria (marsupials)
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- Order Erinaceomorpha, Family Erinaceidae
- Erinaceus europaeus, western European hedgehog
- Order Eulipotyphla, Family Solenodontidae
- Order Chiroptera
- Family Megadermatidae
- Megaderma lyra, greater false vampire bat (2013)
- Family Mormoopidae
- Pteronotus parnellii, Parnell's mustached bat (2013)
- Family Pteropodidae
- Pteropus vampyrus, fruit bat (2012)
- Eidolon helvum, Old World fruit bat (2013)
- Family Rhinolophidae
- Family Vespertilionidae
- Myotis lucifugus, little brown bat (2010)
- Family Phyllostomidae
- Leptonycteris yerbabuenae, long nosed bat (2020)
- Leptonycteris nivalis, greater long nosed bat (2020)
- Musonycteris harrisoni, banana bat (2020)
- Artibeus jamaicensis, Jamaican fruit bat (2020)
- Macrotus waterhousii, Waterhouse's leaf-nosed bat (2020)
- Family Megadermatidae
- Order Primates
- Order Erinaceomorpha, Family Erinaceidae
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- Family Cercopithecidae
- Macaca mulatta, rhesus macaque (2007 & Chinese rhesus macaque Macaca mulatta lasiota in 2011)
- Macaca fascicularis, Cynomolgus or crab-eating macaque (2011)
- Rhinopithecus roxellana, golden snub-nosed monkey (2019)
- Family Hominidae
- Subfamily Ponginae
- Pongo pygmaeus/Pongo abelii, orangutan (Borneo/Sumatra) (2011)
- Subfamily Homininae
- Gorilla gorilla, western gorilla (2012)
- Homo sapiens, modern human (draft 2001 91%-96% complete)
- Homo neanderthalensis, Neanderthal (draft 2010)
- Pan troglodytes, chimpanzee (2005)
- Pan paniscus, bonobo (2012)
- Subfamily Ponginae
- Family Cercopithecidae
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Strain: C57BL/6J, mouse (2002)
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- Rattus norvegicus, rat (2004)
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- Order Lagomorpha
- Family Leporidae
- Oryctolagus cuniculus, European rabbit (2010)
- Family Leporidae
- Order Lagomorpha
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Protostomia
Insects
- Order Blattodea
- Blattella germanica, German cockroach (2018)
- Periplaneta americana, American cockroach (2018)
- Zootermopsis nevadensis, a dampwood termite (2014
- Cryptotermes secundus, a drywood termite(2018)
- Macrotermes natalensis, a higher termite (2014
- Order Coleoptera
- Dendroctonus ponderosae Hopkins, beetle (mountain pine beetle) (2013)
- Aquatica lateralis, Japanese aquatic firefly "Heike-botaru" (firefly) (2018)
- Photinus pyralis, Big Dipper firefly (2018)
- Protaetia brevitarsis, White-spotted flower chafer (2019)
- Tribolium castaneum Strain:GA-2, beetle (red flour beetle) (2008)
- Order Diptera
- Family Calliphoridae
- Aldrichina grahami, Forensic blowfly (2020)
- Family Chironomidae
- Dasypogon diadema, Hunting Robber fly (2019)
- Parochlus steinend, Antarctic winged midge (2017)
- Proctacanthus coquilletti, Assassin fly (2017)
- Family Culicidae (mosquitoes)
- Aedes aegypti Strain:LVPib12, mosquito (vector of dengue fever, etc.) (2007)
- Aedes albopictus (2015)
- Anopheles darlingi
- Anopheles gambiae Strain: PEST, mosquito (vector of malaria) (2002)
- Anopheles gambiae Strain: M, mosquito (vector of malaria) (2010)
- Anopheles gambiae Strain: S, mosquito (vector of malaria) (2010))
- Anopheles sinensis, mosquito (vector of vivax malaria, lympahtic filariasis and Setaria infections), (2014)
- Anopheles stephensii
- Anopheles arabiensis (2015)
- Anopheles quadriannulatus (2015)
- Anopheles merus (2015)
- Anopheles melas (2015)
- Anopheles christyi (2015)
- Anopheles epiroticus (2015)
- Anopheles maculatus (2015)
- Anopheles culicifacies (2015)
- Anopheles minimus (2015)
- Anopheles funestus (2015)2019
- Anopheles dirus (2015)
- Anopheles farauti (2015)
- Anopheles atroparvus (2015)
- Anopheles sinensis (2015)
- Anopheles albimanus (2015)
- Culex quinquefasciatus, mosquito (vector of West Nile virus, filariasis etc.) (2010)
- Family Drosophilidae (fruit flies)
- Drosophila albomicans, fruit fly (2012)
- Drosophila ananassae, fruit fly (2007)
- Drosophila biarmipes, fruit fly (2011)
- Drosophila bipectinata, fruit fly (2011)
- Drosophila erecta, fruit fly (2007)
- Drosophila elegans, fruit fly (2011)
- Drosophila eugracilis, fruit fly (2011)
- Drosophila ficusphila, fruit fly (2011)
- Drosophila grimshawi, fruit fly (2007)
- Drosophila kikkawai, fruit fly (2011)
- Drosophila melanogaster, fruit fly (model organism) (2000)
- Drosophila mojavensis, fruit fly (2007)
- Drosophila neotestacea, fruit fly (transcriptome 2014)
- Drosophila persimilis, fruit fly (2007)
- Drosophila pseudoobscura, fruit fly (2005)
- Drosophila rhopaloa, fruit fly (2011)
- Drosophila santomea, fruit fly
- Drosophila sechellia, fruit fly (2007)
- Drosophila simulans, fruit fly (2007)
- Drosophila takahashi, fruit fly (2011)
- Drosophila virilis, fruit fly (2007)
- Drosophila willistoni, fruit fly (2007)
- Drosophila yakuba, fruit fly (2007)
- Family Phoridae
- Megaselia abdita, scuttle fly (transcriptome 2013)
- Family Psychodidae (drain flies)
- Clogmia albipunctata, moth midge (transcriptome 2013)
- Family Sarcophagidae (flesh flies)
- Sarcophaga Bullata, Flesh fly (2019)
- Family Syrphidae (hoverflies)
- Episyrphus balteatus, hoverfly (transcriptome 2011)
- Family Calliphoridae
- Order Hemiptera
- Acyrthosiphon pisum, aphid (pea aphid) (2010)
- Ericerus pela, Chinese wax scale insect (2019)
- Laodelphax striatellus, small brown planthopper (2017)
- Lycorma delicatula, spotted lanternfly (2019)
- Rhodnius prolixus, kissing-bug (2015)
- Rhopalosiphum maidis, Corn leaf aphid (2019)
- Sitobion miscanthi, Indian grain aphid (2019)
- Triatoma rubrofasciata, assassin bug (2019)
- Order Hymenoptera
- Acromyrmex echinatior colony Ae372, ant (Panamanian leafcutter) (2011)
- Apis mellifera, bee (honey bee), (model for eusocial behavior) (2006)
- Atta cephalotes, ant (leaf-cutter ant) (2011)
- Camponotus floridanus, ant (2010)
- Cerapachys biroi, ant (clonal raider ant)(2014)
- Harpegnathos saltator, ant (2010)
- Lasius niger, ant (black garden ant)(2017)
- Linepithema humile, ant (Argentine ant) (2011)
- Nasonia giraulti, wasp (parasitoid wasp) (2010)
- Nasonia longicornis, wasp (parasitoid wasp) (2010)
- Nasonia vitripennis, wasp (parasitoid wasp; model organism) (2010)
- Nomia Melanderi, Alkali bee (2019)
- Pogonomyrmex barbatus, ant (red harvester ant) (2011)
- Solenopsis invicta, ant (fire ant) (2011)
- Order Lepidoptera
- Antharaea yamamai, Japanese oak silk moth (2019)
- Bicyclus anynana, squinting bush brown (2017)
- Bombyx mori Strain:p50T, moth (domestic silk worm) (2004)
- Cydia pomonella, codling moth (2019)
- Danaus plexippus, butterfly (monarch butterfly) (2011)
- Heliconius melpomene, butterfly (2012)
- Melitaea cinxia, Glanville fritillary butterfly (2014)
- Megathymus ursus violae, bear giant skipper butterfly (2018)
- Papilio bianor, Chinese peacock butterfly (2019)
- Pieris rapae, small cabbage white butterfly (2016)
- Plutella xylostella, moth (diamondback moth) (2013)
- Spodoptera frugiperda, Fall armyworm (2017)
- Eudocima phalonia, fruit-piercing moth (2017)
- Order Orthoptera
- Locusta migratoria, migratory locust (2014)
- Schistocerca gregaria, desert locust (2020)
- Order Phthiraptera
- Pediculus humanus, louse (sucking louse; parasite) (2010)
- Order Trichoptera
- Stenopsyche tienmushanensis, Caddisfly (2018)
Crustaceans
- Acartia tonsa dana, cosmopolitan calanoid copepod (2019)
- Daphnia pulex, water flea (2007)
- Eulimnadia Texana, Clam Shrimp (2018)
- Neocaridina denticulata, shrimp (2014)
- Parhyale hawaiensis, amphipod (2016)
- Portunus trituberculatus, swimming crab (2020)
- Procambarus virginalis, marbled crayfish (2018)
- Tigriopus kingsejongensis, antarctic-endemic copepod (2017)
Chelicerates
- Limulus polyphemus, Atlantic horseshoe crab (2014)
- Carcinoscorpius rotundicauda, mangrove horseshoe crab (2020)
Of which Arachnids:
- Acanthoscurria geniculata, Brazilian whiteknee tarantula (2014)
- Dysdera silvatica, Canary Island nocturnal endemic woodlouse spider (2019)
- Ixodes scapularis, (deer tick) (2016)
- Mesobuthus martensii, Chinese scorpion (2013)
- Nephila clavipes, (golden silk orb-weaver) (2017)
- Parasteatoda tepidariorum, (common house spider) (2017)
- Stegodyphus mimosarum, African social velvet spider (2014)
- Tetranychus urticae, spider mite (2011)
- Tropilaelaps mercedesae, (honeybee mite) (2017)
Myriapoda
- Strigamia maritima, centipede
Tardigrades
- Hypsibius dujardini, water bear (2015)
Molluscs
- Achatina fulica, giant African snail (2019)
- Architeuthis dux, giant squid (2020)
- Argopecten purpuratus, peruvian scallop (2018)
- Bathymodiolus platifrons, seep mussel (2017
- Biomphalaria glabrata, a medically-important air-breathing freshwater snail in the family Planorbidae (2017)
- Chlamys farreri, Zhikong scallop (2017)
- Crassostrea gigas, Pacific oyster (2012)
- Dreissena rostriformis, Quagga mussel (2019)
- Euprymna scolopes, Hawaiian bobtail squid (2019)
- Elysia chlorotica, a solar-powered sea slug (2019)
- Haliotis discus hannai, pacific abalone (2017)
- Lottia gigantea, owl limpet (2013)
- Limnoperna fortunei, invasive golden mussel (2017)
- Modiolus philippinarum, shallow water mussel (2017)
- Mytilus galloprovincialis, Mediterranean mussel (2016)
- Octopus bimaculoides, California two-spot octopus (2015)
- Octopus minor, common long-arm octopus (2018
- Octopus vulgaris, common octopus (2019)
- Patinopecten yessoensis, Yesso scallop (2017)
- Pecten maximus, Great scallop (2020)
- Pinctada fucata, Pearl oyster (2012)
- Pomacea canaliculata, golden apple snail (2018)
- Ruditapes philippinarum, Manila clam (2017)
- Saccostrea glomerata, Sydney rock oyster (2018)
- Scapharca broughtonii, Blood clam (2019)
- Venustaconcha ellipsiformis, freshwater mussel (2018)
Platyhelminthes
- Clonorchis sinensis, liver fluke (human pathogen) (draft 2011)
- Echinococcus granulosus, tapeworm (dog pathogen) (2013, 2013)
- Echinococcus multilocularis, tapeworm (2013)
- Hymenolepis microstoma, tapeworm (2013)
- Limnoperna fortunei, golden mussel (2017)
- Schistosoma haematobium, schistosome (human pathogen) (2012 2019)
- Schistosoma japonicum, schistosome (human pathogen) (2009)
- Schistosoma mansoni, schistosome (human pathogen) (2009, 2012)
- Schmidtea mediterranea, planarian (model organism) (2006)
- Taenia solium, tapeworm (2013)
Nematodes
- Ancylostoma ceylanicum, zoonotic hookworm infecting both humans and other mammals (2015)
- Ascaris suum, pig-infecting giant roundworm, closely related to human-infecting giant roundworm Ascaris lumbricoides (2011)
- Brugia malayi (Strain:TRS), human-infecting filarial parasite (2007)
- Bursaphelenchus xylophilus, infects pine trees (2011)
- Caenorhabditis angaria (Strain:PS1010) (2010)
- Caenorhabditis brenneri, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Caenorhabditis briggsae (2003)
- Caenorhabditis elegans (Strain:Bristol N2), model organism (1998)
- Caenorhabditis remanei, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Dirofilaria immitis, dog-infecting filarial parasite (2012)
- Globodera pallida, plant pathogen (2014)
- Haemonchus contortus, blood-feeding parasite infecting sheep and goats (2013)
- Heterodera glycines, soybean cyst nematode (2019)
- Heterorhabditis bacteriophora, (2013)
- Loa loa, human-infecting filarial parasite (2013)
- Meloidogyne hapla, northern root-knot nematode (plant pathogen) (2008)
- Meloidogyne incognita, southern root-knot nematode (plant pathogen) (2008)
- Necator americanus, human-infecting hookworm (2014)
- Onchocerca volvulus, human-infecting filarial parasite
- Pristionchus pacificus, model invertebrate (2008)
- Romanomermis culicivorax, entomopathogenic nematode that invades larvae of various mosquito species (2013)
- Schistosoma haematobium, urinary blood fluke infecting humans (2019)
- Trichuris suis, pig-infecting whipworm (2014)
- Trichuris muris, mouse-infecting whipworm (2014)
- Trichuris trichiura, human-infecting whipworm (2014)
- Wuchereria bancrofti, human-infecting filarial parasite
Annelids
- Capitella teleta, polychaete (2007, 2013)
- Helobdella robusta, leech (2007, 2013)
- Eisenia fetida, earthworm (2015, 2016)
Brachiopoda
- Lingula anatina, brachiopod (2015,)
Rotifera
- Adineta vaga, rotifer (2013,)==Porifera==
- Amphimedon queenslandica, a sponge (2009)
- Stylissa carteri (2016)
- Xestospongia testudinaria (2016)
Ctenophora
- Mnemiopsis leidyi (Ctenophora), (order Lobata) (2012/2013)
- Pleurobrachia bachei (Ctenophora) (2014)
Placozoa
- Trichoplax adhaerens, a Placozoan (2008)
- Hoilungia hongkongensis, nov. gen H13 Placozoan (2018)
Cnidaria
- Hydra vulgaris, (previously Hydra magnipapillata), a model hydrozoan (2010)
- Nematostella vectensis, a model anemone (starlet sea anemone) (2007)
- Aiptasia pallida, a sea anemone (2015)
- Acropora digitifera, a coral (2011)
- Renilla muelleri, an octocoral (2017, 2019)
- Stylophora pistillata, a coral (2017)
- Aurelia aurita, moon jellyfish (2019)
- Clytia hemisphaerica, Hydrozoan jellyfish (2019)
- Pocillopora damicornis, cauliflower coral (2018)
- Nemopilema nomurai, Nomura jellyfish (2019)
- Rhopilema esculentum, Flame jellyfish (2020)
- Cassiopea xamachana (Scyphozoa) (2019)
- Alatina alata (Cubozoa) (2019)
- Calvadosia cruxmelitensis (Staurozoa) (2019)
- Dendronephthya gigantea, an octocoral (2019)
Deuterostomia
Hemichordates
- Saccoglossus kowalevskii, Enteropneusta (2015)
- Ptychodera flava, Enteropneusta (2015)
Echinoderms
- Acanthaster planci, starfish (2014)
- Apostichopus japonicus, sea cucumber (2017)
- Strongylocentrotus purpuratus, a sea urchin and model deuterostome (2006)
Tunicates
- Ciona intestinalis, a tunicate (2002)
- Ciona savignyi, a tunicate (2007)
- Oikopleura dioica, a larvacean (2001).
Cephalochordates
- Branchiostoma floridae, a lancelet (2008)
Cyclostomes
- Petromyzon marinus, a lamprey (2009, 2013)
Cartilaginous fish
- Callorhinchus milii, an elephant shark (2007)
- Rhincodon typus, Whale shark (2017)
- Carcharodon carcharias, Great white shark ( 2018')
- Chiloscyllium punctatum, Brownbanded bamboo shark (2018)
- Scyliorhinus torazame, Cloudy catshark (2018)
Bony fish
- Order Anabantiformes
- Betta splendens, Siamese fighting fish (2018)
- Order Beloniformes
- Oryzias latipes, medaka (2007)
- Order Centrarchiformes
- Oplegnathus fasciatus, barred knifejaw (2019)
- Order Characiformes
- Astyanax mexicanus, Mexican tetra (2014)
- Order Cichliformes
- Oreochromis niloticus, Nile tilapia (2019)
- Metriaclima zeb, Lake Malawi cichlid (2019)
- Order Clupeiformes
- Clupea harengus, Atlantic herring (2020)
- Coilia nasus, Japanese grenadier anchovy (2020)
- Sardina pilchardus, European sardine (2019)
- Order Coelacanthiformes
- Latimeria chalumnae, West Indian Ocean coelacanth and oldest known living lineage of Sarcopterygii (2013)
- Order Cypriniformes
- Anabarilius grahami Regan, Kanglang fish (2018)
- Danio rerio, a zebrafish (2007)
- Heterandria formosa, Least Killifish (2019)
- Oxygymnocypris stewartii,(2019)
- Megalobrama amblycephala, blunt snout bream (2017)
- Order Cyprinodontiformes
- Heterandria formosa, least killifish (2019)
- Xiphophorus maculatus, platyfish (2013)
- Nothobranchius furzeri, turquoise killifish (2015)
- Order Esociformes
- Esox lucius, northern pike (2014)
- Order Gadiformes
- Gadus morhua, Atlantic cod (2011)
- Order Gasterosteiformes
- Gasterosteus aculeatus, three-spined stickleback (2006, 2012)
- Order Gymnotiformes
- Electrophorus electricus, electric eel (2014)
- Order Lepisosteiformes
- Lepisosteus oculatus, spotted gar
- Order Osmeriformes
- Protosalanx hyalocranius, clearhead icefish (2017)
- Order Perciformes
- Channa argus, northern snakehead (2017)
- Dissostichus mawsoni, Antarctic toothfish (2019)
- Eleginops maclovinus, Patagonian robalo (2019)
- Larimichthys crocea, large yellow croaker (2014)
- Lutjanus campechanus, Northern red snapper (2020)
- Parachaenichthys charcoti, Antarctic dragonfish (2017)
- Seriola dumerili, Greater amberjack (2017)
- Sillago sinica, chinese sillago (2018)
- Sparus aurata, gilt-head bream (2018)
- Order Salmoniformes
- Salmo salar, Atlantic salmon (2016)
- Oncorhynchus mykiss, rainbow trout (2014)
- Oncorhynchus tshawytscha, Chinook salmon (2018)
- Order Scorpaeniformes
- Sebastes schlegelii, Black rockfish (2018)
- Order Siluriformes
- Ictalurus punctatus, channel catfish (2016)
- Order Tetraodontiformes
- mola mola, ocean sunfish (2016)
- Takifugu rubripes, a puffer fish (International Fugu Genome Consortium 2002)
- Tetraodon nigroviridis, a puffer fish (2004)
Amphibians
- Ambystoma mexicanum, axolotl (2018)
- Xenopus tropicalis, western clawed frog (2010)
- Nanorana parkeri, High Himalaya frog (2015)
- Oophaga pumilio, Strawberry poison-dart frog (2018)
- Rana [Lithobates] catesbeiana, North American bullfrog (2017)
- Rhinella marina, Cane toad (2018)
- Vibrissaphora ailaonica, Mustache toad (2019)
- Leptobrachium leishanense, Leishan Mustache toad (2019)
Reptiles
- Order Crocodylia
- Alligator mississippiensis, American alligator (2012)
- Alligator sinensis, Chinese alligator (2013, 2014)
- Crocodylus porosus, salt water crocodile (2012)
- Gavialis gangeticus, Indian gharial (2012)
- Order Squamata
- Anolis carolinensis JBL SC #1, green anole lizard (2011)
- Dopasia gracilis, Burmese glass lizard, (2015)
- Emydocephalus ijimae, Ijima's turtle-headed sea snake, (2019)
- Eublepharis macularius, Leopard gecko (2016)
- Hydrophis melanocephalus, slender-necked sea snake, (2019)
- Laticauda colubrina, yellow-lipped sea krait, (2019)
- Laticauda laticaudata, blue-linged sea krait, (2019)
- Ophiophagus hannah, king cobra (2013)
- Pantherophis guttatus, corn snake (2014)
- Pogona vitticeps, Australian dragon lizard (2015)
- Python molurus bivittatus, Burmese python (2013)
- Salvator Merinae, tegu lizard (2018)
- Shinisaurus crocodilurus, Chinese crocodile lizard, (2017)
- Order Testudines (Chelonii)
- Chelonia mydas, green sea turtle (2013)
- Chrysemys picta bellii, western painted turtle (2013)
- Pelodiscus sinensis, soft-shelled turtle (2013)
- Platysternon megacephalum, Big-headed turtle (2019)
Birds
- Order Accipitriformes
- Haliaeetus albicilla, white-tailed eagle (2014)
- Haliaeetus leucocephalus, bald eagle (2014)
- Aegypius monachus, cinereous vulture (2015)
- Aquila chrysaetos, golden eagle (2018)
- Order Anseriformes
- Anas platyrhynchos, mallard duck (or wild duck) (2013)
- Order Apodiformes
- Chaetura pelagica, chimney swift (2014)
- Order Bucerotiformes
- Buceros rhinoceros silvestris, rhinoceros hornbill (2014)
- Order Caprimulgiformes
- Order Cariamiformes
- Cariama cristata, red-legged seriema (2014)
- Order Cathartiformes
- Cathartes aura, turkey vulture (2014)
- Order Charadriiformes
- Charadrius vociferus, killdeer (2014)
- Himantopus novaezelandiae, kakī/black stilt (2019)
- Himantopus himantopus, pied stilt (2019)
- Recurvirostra avosetta, pied avocet (2019)
- Order Ciconiiformes
- Nipponia nippon, crested ibis (2014)
- Order Coliiformes
- Colius striatus, speckled mousebird (2014)
- Order Columbiformes
- Columba livia, pigeon (2014)
- Order Coraciiformes
- Merops nubicus, carmine bee-eater (2014)
- Order Cuculiformes
- Cuculus canorus, common cuckoo (2014)
- Tauraco erythrolophus, red-crested turaco (2014)
- Order Eurypygiformes
- Eurypyga helias, sunbittern (2014)
- Order Falconiformes
- Falco cherrug, saker falcon (2013)
- Falco peregrinus, peregrine falcon (2013)
- Order Galliformes
- Arborophila rufipectus, Sichuan Partridge (2019)
- Gallus gallus, chicken (2004)
- Meleagris gallopavo, domesticated turkey (2011)
- Numida meleagris, helmeted guinea fowl (2019)
- Pavo cristatus, Indian peafowl (2018)
- Phasianus colchicus, Common Pheasant (2019)
- Syrmaticus mikado, mikado pheasant (2018)
- Tetrao tetrix, black grouse (2014)
- Order Gaviiformes
- Gavia stellata, red-throated loon (2014)
- Order Gruiformes
- Order Leptosomiformes
- Leptosomus discolor, cuckoo-roller (2014)
- Order Mesitornithiformes
- Mesitornis unicolor, brown mesite (2014)
- Order Opisthocomiformes
- Opisthocomus hoazin, hoatzin (2014)
- Order Passeriformes
- Acanthisitta chloris, rifleman (2014)
- Corvus brachyrhynchos, American crow (2014)
- Corvus hawaiiensis, Hawaiian crow (2018)
- Eopsaltria australis, Eastern yellow robin (2019)
- Ficedula albicollis, collared flycatcher (2012)
- Ficedula hypoleuca, pied flycatcher (2012)
- Geospiza fortis, medium ground-finch (2014)
- Hirundo rustica, barn swallow (2018)
- Lonchura striata domestica, Society finch (2018)
- Manacus vitellinus, golden-collared manakin (2014)
- Lycocorax pyrrhopterus, Paradise-crow (2019)
- Manacus vitellinus, golden-collared manakin (2014)
- Paradisaea rubra, red bird-of-paradise (2019)
- Pteridophora alberti, king of saxony bird-of-paradise (2019)
- Ptiloris paradiseus, paradise riflebird (2019)
- Taeniopygia guttata, zebra finch (2010)
- Order Pelecaniformes
- Egretta garzetta, little egret (2014)
- Pelecanus crispus, Dalmatian pelican (2014)
- Order Phaethontiformes
- Order Phoenicopteriformes
- Phoenicopterus ruber ruber, American flamingo (2014)
- Order Piciformes
- Picoides pubescens, downy woodpecker (2014)
- Order Podicipediformes
- Order Procellariiformes
- Fulmarus glacialis, northern fulmar (2014)
- Order Pterocliformes
- Pterocles gutturalis, yellow-throated sandgrouse (2014)
- Order Psittaciformes
- Amazona leucocephala, Cuban amazon (2019)
- Amazona ventralis, Hispaniolan amanzon (2019)
- Amazona vittata, Puerto Rican parrot (2012)
- Ara macao, Scarlet macaw (2013)
- Cyanoramphus malherbi, kākāriki karaka (2020)
- Melopsittacus undulatus, budgerigar (2014)
- Nestor notabilis, kea (2014)
- Order Struthioniformes
- Struthio camelus australis, common ostrich (2014)
- Order Sphenisciformes
- Aptenodytes forsteri, emperor penguin (2014)
- Aptenodytes patagonicus, king penguin (2019)
- Eudyptes chrysocome, Western rockhopper penguin (2019)
- Eudyptes chrysolophus chrysolophus, Macaroni penguin (2019)
- Eudyptes chrysolophus schlegeli, Royal penguin (2019)
- Eudyptes filholi, Eastern rockhopper penguin (2019)
- Eudyptes moseleyi, Northern rockhopper penguin (2019)
- Eudyptes pachyrhynchus, Fiordland-crested penguin (2019)
- Eudyptes robustus, Snares-crested penguin (2019)
- Eudyptes sclateri, Erect-crested penguin (2019)
- Eudyptula minor albosignata, white-flippered penguin (2019)
- Eudyptula minor minor, little blue penguin (2019)
- Eudyptula novaehollandiae, fairy penguin (2019)
- Megadyptes antipodes antipodes, yellow eyed penguin or hoiho (2019)
- Pygoscelis adeliae, Adélie penguin (2014)
- Pygoscelis antarctica, chinstrap penguin (2019)
- Pygoscelis papua, gentoo penguin (2019)
- Spheniscus demersus, African penguin (2019)
- Spheniscus humboldti, Humboldt penguin (2019)
- Spheniscus magellanicus, Magellanic penguin (2019)
- Spheniscus mendiculus, Galápagos penguin (2019)
- Order Strigiformes
- Tyto alba, barn owl (2014)
- Strix occidentalis caurina, northern spotted owl (2017)
- Strix varia, Barred owl (2017)
- Order Suliformes
- Phalacrocorax auritus, double-crested cormorant (2017)
- Phalacrocorax brasilianus, Neotropic cormorant (2017)
- Phalacrocorax carbo, great cormorant (2014)
- Phalacrocorax harrisi, Galapagos cormorant (2017)
- Phalacrocorax pelagicus, pelagic cormorant (2017)
- Order Tinamiformes
- Tinamus guttatus, white-throated tinamou (2014)
- Order Trochiliformes
- Calypte anna, Anna's hummingbird (2014)
- Order Trogoniformes
- Apaloderma vittatum, bar-tailed trogon (2014)
Mammals
- Subclass Prototheria, Order Monotremata, Family Ornithorhynchidae
- Ornithorhynchus anatinus, platypus (2007)
- Subclass Theria (marsupials and placental mammals)
- Infraclass Metatheria (marsupials)
- Order Didelphimorphia, Family Didelphidae (opossums)
- Monodelphis domestica, gray short-tailed opossum (2007)
- Order Dasyuromorphia
- Order Diprotodontia
- Family Macropodidae
- Macropus eugenii, tammar wallaby (2011)
- Family Phascolarctidae
- Phascolarctos cinereus, koala (2013 draft)
- Infraclass Eutheria (placental mammals)
- Family Macropodidae
- Order Didelphimorphia, Family Didelphidae (opossums)
- Infraclass Metatheria (marsupials)
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- Order Erinaceomorpha, Family Erinaceidae
- Erinaceus europaeus, western European hedgehog
- Order Eulipotyphla, Family Solenodontidae
- Order Chiroptera
- Family Megadermatidae
- Megaderma lyra, greater false vampire bat (2013)
- Family Mormoopidae
- Pteronotus parnellii, Parnell's mustached bat (2013)
- Family Pteropodidae
- Pteropus vampyrus, fruit bat (2012)
- Eidolon helvum, Old World fruit bat (2013)
- Family Rhinolophidae
- Family Vespertilionidae
- Myotis lucifugus, little brown bat (2010)
- Family Phyllostomidae
- Leptonycteris yerbabuenae, long nosed bat (2020)
- Leptonycteris nivalis, greater long nosed bat (2020)
- Musonycteris harrisoni, banana bat (2020)
- Artibeus jamaicensis, Jamaican fruit bat (2020)
- Macrotus waterhousii, Waterhouse's leaf-nosed bat (2020)
- Family Megadermatidae
- Order Primates
- Order Erinaceomorpha, Family Erinaceidae
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- Family Cercopithecidae
- Macaca mulatta, rhesus macaque (2007 & Chinese rhesus macaque Macaca mulatta lasiota in 2011)
- Macaca fascicularis, Cynomolgus or crab-eating macaque (2011)
- Rhinopithecus roxellana, golden snub-nosed monkey (2019)
- Family Hominidae
- Subfamily Ponginae
- Pongo pygmaeus/Pongo abelii, orangutan (Borneo/Sumatra) (2011)
- Subfamily Homininae
- Gorilla gorilla, western gorilla (2012)
- Homo sapiens, modern human (draft 2001 91%-96% complete)
- Homo neanderthalensis, Neanderthal (draft 2010)
- Pan troglodytes, chimpanzee (2005)
- Pan paniscus, bonobo (2012)
- Subfamily Ponginae
- Family Cercopithecidae
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Strain: C57BL/6J, mouse (2002)
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- Rattus norvegicus, rat (2004)
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- Order Lagomorpha
- Family Leporidae
- Oryctolagus cuniculus, European rabbit (2010)
- Family Leporidae
- Order Lagomorpha
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Protostomia
Insects
- Order Blattodea
- Blattella germanica, German cockroach (2018)
- Periplaneta americana, American cockroach (2018)
- Zootermopsis nevadensis, a dampwood termite (2014
- Cryptotermes secundus, a drywood termite(2018)
- Macrotermes natalensis, a higher termite (2014
- Order Coleoptera
- Dendroctonus ponderosae Hopkins, beetle (mountain pine beetle) (2013)
- Aquatica lateralis, Japanese aquatic firefly "Heike-botaru" (firefly) (2018)
- Photinus pyralis, Big Dipper firefly (2018)
- Protaetia brevitarsis, White-spotted flower chafer (2019)
- Tribolium castaneum Strain:GA-2, beetle (red flour beetle) (2008)
- Order Diptera
- Family Calliphoridae
- Aldrichina grahami, Forensic blowfly (2020)
- Family Chironomidae
- Dasypogon diadema, Hunting Robber fly (2019)
- Parochlus steinend, Antarctic winged midge (2017)
- Proctacanthus coquilletti, Assassin fly (2017)
- Family Culicidae (mosquitoes)
- Aedes aegypti Strain:LVPib12, mosquito (vector of dengue fever, etc.) (2007)
- Aedes albopictus (2015)
- Anopheles darlingi
- Anopheles gambiae Strain: PEST, mosquito (vector of malaria) (2002)
- Anopheles gambiae Strain: M, mosquito (vector of malaria) (2010)
- Anopheles gambiae Strain: S, mosquito (vector of malaria) (2010))
- Anopheles sinensis, mosquito (vector of vivax malaria, lympahtic filariasis and Setaria infections), (2014)
- Anopheles stephensii
- Anopheles arabiensis (2015)
- Anopheles quadriannulatus (2015)
- Anopheles merus (2015)
- Anopheles melas (2015)
- Anopheles christyi (2015)
- Anopheles epiroticus (2015)
- Anopheles maculatus (2015)
- Anopheles culicifacies (2015)
- Anopheles minimus (2015)
- Anopheles funestus (2015)2019
- Anopheles dirus (2015)
- Anopheles farauti (2015)
- Anopheles atroparvus (2015)
- Anopheles sinensis (2015)
- Anopheles albimanus (2015)
- Culex quinquefasciatus, mosquito (vector of West Nile virus, filariasis etc.) (2010)
- Family Drosophilidae (fruit flies)
- Drosophila albomicans, fruit fly (2012)
- Drosophila ananassae, fruit fly (2007)
- Drosophila biarmipes, fruit fly (2011)
- Drosophila bipectinata, fruit fly (2011)
- Drosophila erecta, fruit fly (2007)
- Drosophila elegans, fruit fly (2011)
- Drosophila eugracilis, fruit fly (2011)
- Drosophila ficusphila, fruit fly (2011)
- Drosophila grimshawi, fruit fly (2007)
- Drosophila kikkawai, fruit fly (2011)
- Drosophila melanogaster, fruit fly (model organism) (2000)
- Drosophila mojavensis, fruit fly (2007)
- Drosophila neotestacea, fruit fly (transcriptome 2014)
- Drosophila persimilis, fruit fly (2007)
- Drosophila pseudoobscura, fruit fly (2005)
- Drosophila rhopaloa, fruit fly (2011)
- Drosophila santomea, fruit fly
- Drosophila sechellia, fruit fly (2007)
- Drosophila simulans, fruit fly (2007)
- Drosophila takahashi, fruit fly (2011)
- Drosophila virilis, fruit fly (2007)
- Drosophila willistoni, fruit fly (2007)
- Drosophila yakuba, fruit fly (2007)
- Family Phoridae
- Megaselia abdita, scuttle fly (transcriptome 2013)
- Family Psychodidae (drain flies)
- Clogmia albipunctata, moth midge (transcriptome 2013)
- Family Sarcophagidae (flesh flies)
- Sarcophaga Bullata, Flesh fly (2019)
- Family Syrphidae (hoverflies)
- Episyrphus balteatus, hoverfly (transcriptome 2011)
- Family Calliphoridae
- Order Hemiptera
- Acyrthosiphon pisum, aphid (pea aphid) (2010)
- Ericerus pela, Chinese wax scale insect (2019)
- Laodelphax striatellus, small brown planthopper (2017)
- Lycorma delicatula, spotted lanternfly (2019)
- Rhodnius prolixus, kissing-bug (2015)
- Rhopalosiphum maidis, Corn leaf aphid (2019)
- Sitobion miscanthi, Indian grain aphid (2019)
- Triatoma rubrofasciata, assassin bug (2019)
- Order Hymenoptera
- Acromyrmex echinatior colony Ae372, ant (Panamanian leafcutter) (2011)
- Apis mellifera, bee (honey bee), (model for eusocial behavior) (2006)
- Atta cephalotes, ant (leaf-cutter ant) (2011)
- Camponotus floridanus, ant (2010)
- Cerapachys biroi, ant (clonal raider ant)(2014)
- Harpegnathos saltator, ant (2010)
- Lasius niger, ant (black garden ant)(2017)
- Linepithema humile, ant (Argentine ant) (2011)
- Nasonia giraulti, wasp (parasitoid wasp) (2010)
- Nasonia longicornis, wasp (parasitoid wasp) (2010)
- Nasonia vitripennis, wasp (parasitoid wasp; model organism) (2010)
- Nomia Melanderi, Alkali bee (2019)
- Pogonomyrmex barbatus, ant (red harvester ant) (2011)
- Solenopsis invicta, ant (fire ant) (2011)
- Order Lepidoptera
- Antharaea yamamai, Japanese oak silk moth (2019)
- Bicyclus anynana, squinting bush brown (2017)
- Bombyx mori Strain:p50T, moth (domestic silk worm) (2004)
- Cydia pomonella, codling moth (2019)
- Danaus plexippus, butterfly (monarch butterfly) (2011)
- Heliconius melpomene, butterfly (2012)
- Melitaea cinxia, Glanville fritillary butterfly (2014)
- Megathymus ursus violae, bear giant skipper butterfly (2018)
- Papilio bianor, Chinese peacock butterfly (2019)
- Pieris rapae, small cabbage white butterfly (2016)
- Plutella xylostella, moth (diamondback moth) (2013)
- Spodoptera frugiperda, Fall armyworm (2017)
- Eudocima phalonia, fruit-piercing moth (2017)
- Order Orthoptera
- Locusta migratoria, migratory locust (2014)
- Schistocerca gregaria, desert locust (2020)
- Order Phthiraptera
- Pediculus humanus, louse (sucking louse; parasite) (2010)
- Order Trichoptera
- Stenopsyche tienmushanensis, Caddisfly (2018)
Crustaceans
- Acartia tonsa dana, cosmopolitan calanoid copepod (2019)
- Daphnia pulex, water flea (2007)
- Eulimnadia Texana, Clam Shrimp (2018)
- Neocaridina denticulata, shrimp (2014)
- Parhyale hawaiensis, amphipod (2016)
- Portunus trituberculatus, swimming crab (2020)
- Procambarus virginalis, marbled crayfish (2018)
- Tigriopus kingsejongensis, antarctic-endemic copepod (2017)
Chelicerates
- Limulus polyphemus, Atlantic horseshoe crab (2014)
- Carcinoscorpius rotundicauda, mangrove horseshoe crab (2020)
Of which Arachnids:
- Acanthoscurria geniculata, Brazilian whiteknee tarantula (2014)
- Dysdera silvatica, Canary Island nocturnal endemic woodlouse spider (2019)
- Ixodes scapularis, (deer tick) (2016)
- Mesobuthus martensii, Chinese scorpion (2013)
- Nephila clavipes, (golden silk orb-weaver) (2017)
- Parasteatoda tepidariorum, (common house spider) (2017)
- Stegodyphus mimosarum, African social velvet spider (2014)
- Tetranychus urticae, spider mite (2011)
- Tropilaelaps mercedesae, (honeybee mite) (2017)
Myriapoda
- Strigamia maritima, centipede
Tardigrades
- Hypsibius dujardini, water bear (2015)
Molluscs
- Achatina fulica, giant African snail (2019)
- Architeuthis dux, giant squid (2020)
- Argopecten purpuratus, peruvian scallop (2018)
- Bathymodiolus platifrons, seep mussel (2017
- Biomphalaria glabrata, a medically-important air-breathing freshwater snail in the family Planorbidae (2017)
- Chlamys farreri, Zhikong scallop (2017)
- Crassostrea gigas, Pacific oyster (2012)
- Dreissena rostriformis, Quagga mussel (2019)
- Euprymna scolopes, Hawaiian bobtail squid (2019)
- Elysia chlorotica, a solar-powered sea slug (2019)
- Haliotis discus hannai, pacific abalone (2017)
- Lottia gigantea, owl limpet (2013)
- Limnoperna fortunei, invasive golden mussel (2017)
- Modiolus philippinarum, shallow water mussel (2017)
- Mytilus galloprovincialis, Mediterranean mussel (2016)
- Octopus bimaculoides, California two-spot octopus (2015)
- Octopus minor, common long-arm octopus (2018
- Octopus vulgaris, common octopus (2019)
- Patinopecten yessoensis, Yesso scallop (2017)
- Pecten maximus, Great scallop (2020)
- Pinctada fucata, Pearl oyster (2012)
- Pomacea canaliculata, golden apple snail (2018)
- Ruditapes philippinarum, Manila clam (2017)
- Saccostrea glomerata, Sydney rock oyster (2018)
- Scapharca broughtonii, Blood clam (2019)
- Venustaconcha ellipsiformis, freshwater mussel (2018)
Platyhelminthes
- Clonorchis sinensis, liver fluke (human pathogen) (draft 2011)
- Echinococcus granulosus, tapeworm (dog pathogen) (2013, 2013)
- Echinococcus multilocularis, tapeworm (2013)
- Hymenolepis microstoma, tapeworm (2013)
- Limnoperna fortunei, golden mussel (2017)
- Schistosoma haematobium, schistosome (human pathogen) (2012 2019)
- Schistosoma japonicum, schistosome (human pathogen) (2009)
- Schistosoma mansoni, schistosome (human pathogen) (2009, 2012)
- Schmidtea mediterranea, planarian (model organism) (2006)
- Taenia solium, tapeworm (2013)
Nematodes
- Ancylostoma ceylanicum, zoonotic hookworm infecting both humans and other mammals (2015)
- Ascaris suum, pig-infecting giant roundworm, closely related to human-infecting giant roundworm Ascaris lumbricoides (2011)
- Brugia malayi (Strain:TRS), human-infecting filarial parasite (2007)
- Bursaphelenchus xylophilus, infects pine trees (2011)
- Caenorhabditis angaria (Strain:PS1010) (2010)
- Caenorhabditis brenneri, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Caenorhabditis briggsae (2003)
- Caenorhabditis elegans (Strain:Bristol N2), model organism (1998)
- Caenorhabditis remanei, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Dirofilaria immitis, dog-infecting filarial parasite (2012)
- Globodera pallida, plant pathogen (2014)
- Haemonchus contortus, blood-feeding parasite infecting sheep and goats (2013)
- Heterodera glycines, soybean cyst nematode (2019)
- Heterorhabditis bacteriophora, (2013)
- Loa loa, human-infecting filarial parasite (2013)
- Meloidogyne hapla, northern root-knot nematode (plant pathogen) (2008)
- Meloidogyne incognita, southern root-knot nematode (plant pathogen) (2008)
- Necator americanus, human-infecting hookworm (2014)
- Onchocerca volvulus, human-infecting filarial parasite
- Pristionchus pacificus, model invertebrate (2008)
- Romanomermis culicivorax, entomopathogenic nematode that invades larvae of various mosquito species (2013)
- Schistosoma haematobium, urinary blood fluke infecting humans (2019)
- Trichuris suis, pig-infecting whipworm (2014)
- Trichuris muris, mouse-infecting whipworm (2014)
- Trichuris trichiura, human-infecting whipworm (2014)
- Wuchereria bancrofti, human-infecting filarial parasite
Annelids
- Capitella teleta, polychaete (2007, 2013)
- Helobdella robusta, leech (2007, 2013)
- Eisenia fetida, earthworm (2015, 2016)
Brachiopoda
- Lingula anatina, brachiopod (2015,)
Rotifera
- Adineta vaga, rotifer (2013,)==Porifera==
- Amphimedon queenslandica, a sponge (2009)
- Stylissa carteri (2016)
- Xestospongia testudinaria (2016)
Ctenophora
- Mnemiopsis leidyi (Ctenophora), (order Lobata) (2012/2013)
- Pleurobrachia bachei (Ctenophora) (2014)
Placozoa
- Trichoplax adhaerens, a Placozoan (2008)
- Hoilungia hongkongensis, nov. gen H13 Placozoan (2018)
Cnidaria
- Hydra vulgaris, (previously Hydra magnipapillata), a model hydrozoan (2010)
- Nematostella vectensis, a model anemone (starlet sea anemone) (2007)
- Aiptasia pallida, a sea anemone (2015)
- Acropora digitifera, a coral (2011)
- Renilla muelleri, an octocoral (2017, 2019)
- Stylophora pistillata, a coral (2017)
- Aurelia aurita, moon jellyfish (2019)
- Clytia hemisphaerica, Hydrozoan jellyfish (2019)
- Pocillopora damicornis, cauliflower coral (2018)
- Nemopilema nomurai, Nomura jellyfish (2019)
- Rhopilema esculentum, Flame jellyfish (2020)
- Cassiopea xamachana (Scyphozoa) (2019)
- Alatina alata (Cubozoa) (2019)
- Calvadosia cruxmelitensis (Staurozoa) (2019)
- Dendronephthya gigantea, an octocoral (2019)
Deuterostomia
Hemichordates
- Saccoglossus kowalevskii, Enteropneusta (2015)
- Ptychodera flava, Enteropneusta (2015)
Echinoderms
- Acanthaster planci, starfish (2014)
- Apostichopus japonicus, sea cucumber (2017)
- Strongylocentrotus purpuratus, a sea urchin and model deuterostome (2006)
Tunicates
- Ciona intestinalis, a tunicate (2002)
- Ciona savignyi, a tunicate (2007)
- Oikopleura dioica, a larvacean (2001).
Cephalochordates
- Branchiostoma floridae, a lancelet (2008)
Cyclostomes
- Petromyzon marinus, a lamprey (2009, 2013)
Cartilaginous fish
- Callorhinchus milii, an elephant shark (2007)
- Rhincodon typus, Whale shark (2017)
- Carcharodon carcharias, Great white shark ( 2018')
- Chiloscyllium punctatum, Brownbanded bamboo shark (2018)
- Scyliorhinus torazame, Cloudy catshark (2018)
Bony fish
- Order Anabantiformes
- Betta splendens, Siamese fighting fish (2018)
- Order Beloniformes
- Oryzias latipes, medaka (2007)
- Order Centrarchiformes
- Oplegnathus fasciatus, barred knifejaw (2019)
- Order Characiformes
- Astyanax mexicanus, Mexican tetra (2014)
- Order Cichliformes
- Oreochromis niloticus, Nile tilapia (2019)
- Metriaclima zeb, Lake Malawi cichlid (2019)
- Order Clupeiformes
- Clupea harengus, Atlantic herring (2020)
- Coilia nasus, Japanese grenadier anchovy (2020)
- Sardina pilchardus, European sardine (2019)
- Order Coelacanthiformes
- Latimeria chalumnae, West Indian Ocean coelacanth and oldest known living lineage of Sarcopterygii (2013)
- Order Cypriniformes
- Anabarilius grahami Regan, Kanglang fish (2018)
- Danio rerio, a zebrafish (2007)
- Heterandria formosa, Least Killifish (2019)
- Oxygymnocypris stewartii,(2019)
- Megalobrama amblycephala, blunt snout bream (2017)
- Order Cyprinodontiformes
- Heterandria formosa, least killifish (2019)
- Xiphophorus maculatus, platyfish (2013)
- Nothobranchius furzeri, turquoise killifish (2015)
- Order Esociformes
- Esox lucius, northern pike (2014)
- Order Gadiformes
- Gadus morhua, Atlantic cod (2011)
- Order Gasterosteiformes
- Gasterosteus aculeatus, three-spined stickleback (2006, 2012)
- Order Gymnotiformes
- Electrophorus electricus, electric eel (2014)
- Order Lepisosteiformes
- Lepisosteus oculatus, spotted gar
- Order Osmeriformes
- Protosalanx hyalocranius, clearhead icefish (2017)
- Order Perciformes
- Channa argus, northern snakehead (2017)
- Dissostichus mawsoni, Antarctic toothfish (2019)
- Eleginops maclovinus, Patagonian robalo (2019)
- Larimichthys crocea, large yellow croaker (2014)
- Lutjanus campechanus, Northern red snapper (2020)
- Parachaenichthys charcoti, Antarctic dragonfish (2017)
- Seriola dumerili, Greater amberjack (2017)
- Sillago sinica, chinese sillago (2018)
- Sparus aurata, gilt-head bream (2018)
- Order Salmoniformes
- Salmo salar, Atlantic salmon (2016)
- Oncorhynchus mykiss, rainbow trout (2014)
- Oncorhynchus tshawytscha, Chinook salmon (2018)
- Order Scorpaeniformes
- Sebastes schlegelii, Black rockfish (2018)
- Order Siluriformes
- Ictalurus punctatus, channel catfish (2016)
- Order Tetraodontiformes
- mola mola, ocean sunfish (2016)
- Takifugu rubripes, a puffer fish (International Fugu Genome Consortium 2002)
- Tetraodon nigroviridis, a puffer fish (2004)
Amphibians
- Ambystoma mexicanum, axolotl (2018)
- Xenopus tropicalis, western clawed frog (2010)
- Nanorana parkeri, High Himalaya frog (2015)
- Oophaga pumilio, Strawberry poison-dart frog (2018)
- Rana [Lithobates] catesbeiana, North American bullfrog (2017)
- Rhinella marina, Cane toad (2018)
- Vibrissaphora ailaonica, Mustache toad (2019)
- Leptobrachium leishanense, Leishan Mustache toad (2019)
Reptiles
- Order Crocodylia
- Alligator mississippiensis, American alligator (2012)
- Alligator sinensis, Chinese alligator (2013, 2014)
- Crocodylus porosus, salt water crocodile (2012)
- Gavialis gangeticus, Indian gharial (2012)
- Order Squamata
- Anolis carolinensis JBL SC #1, green anole lizard (2011)
- Dopasia gracilis, Burmese glass lizard, (2015)
- Emydocephalus ijimae, Ijima's turtle-headed sea snake, (2019)
- Eublepharis macularius, Leopard gecko (2016)
- Hydrophis melanocephalus, slender-necked sea snake, (2019)
- Laticauda colubrina, yellow-lipped sea krait, (2019)
- Laticauda laticaudata, blue-linged sea krait, (2019)
- Ophiophagus hannah, king cobra (2013)
- Pantherophis guttatus, corn snake (2014)
- Pogona vitticeps, Australian dragon lizard (2015)
- Python molurus bivittatus, Burmese python (2013)
- Salvator Merinae, tegu lizard (2018)
- Shinisaurus crocodilurus, Chinese crocodile lizard, (2017)
- Order Testudines (Chelonii)
- Chelonia mydas, green sea turtle (2013)
- Chrysemys picta bellii, western painted turtle (2013)
- Pelodiscus sinensis, soft-shelled turtle (2013)
- Platysternon megacephalum, Big-headed turtle (2019)
Birds
- Order Accipitriformes
- Haliaeetus albicilla, white-tailed eagle (2014)
- Haliaeetus leucocephalus, bald eagle (2014)
- Aegypius monachus, cinereous vulture (2015)
- Aquila chrysaetos, golden eagle (2018)
- Order Anseriformes
- Anas platyrhynchos, mallard duck (or wild duck) (2013)
- Order Apodiformes
- Chaetura pelagica, chimney swift (2014)
- Order Bucerotiformes
- Buceros rhinoceros silvestris, rhinoceros hornbill (2014)
- Order Caprimulgiformes
- Order Cariamiformes
- Cariama cristata, red-legged seriema (2014)
- Order Cathartiformes
- Cathartes aura, turkey vulture (2014)
- Order Charadriiformes
- Charadrius vociferus, killdeer (2014)
- Himantopus novaezelandiae, kakī/black stilt (2019)
- Himantopus himantopus, pied stilt (2019)
- Recurvirostra avosetta, pied avocet (2019)
- Order Ciconiiformes
- Nipponia nippon, crested ibis (2014)
- Order Coliiformes
- Colius striatus, speckled mousebird (2014)
- Order Columbiformes
- Columba livia, pigeon (2014)
- Order Coraciiformes
- Merops nubicus, carmine bee-eater (2014)
- Order Cuculiformes
- Cuculus canorus, common cuckoo (2014)
- Tauraco erythrolophus, red-crested turaco (2014)
- Order Eurypygiformes
- Eurypyga helias, sunbittern (2014)
- Order Falconiformes
- Falco cherrug, saker falcon (2013)
- Falco peregrinus, peregrine falcon (2013)
- Order Galliformes
- Arborophila rufipectus, Sichuan Partridge (2019)
- Gallus gallus, chicken (2004)
- Meleagris gallopavo, domesticated turkey (2011)
- Numida meleagris, helmeted guinea fowl (2019)
- Pavo cristatus, Indian peafowl (2018)
- Phasianus colchicus, Common Pheasant (2019)
- Syrmaticus mikado, mikado pheasant (2018)
- Tetrao tetrix, black grouse (2014)
- Order Gaviiformes
- Gavia stellata, red-throated loon (2014)
- Order Gruiformes
- Order Leptosomiformes
- Leptosomus discolor, cuckoo-roller (2014)
- Order Mesitornithiformes
- Mesitornis unicolor, brown mesite (2014)
- Order Opisthocomiformes
- Opisthocomus hoazin, hoatzin (2014)
- Order Passeriformes
- Acanthisitta chloris, rifleman (2014)
- Corvus brachyrhynchos, American crow (2014)
- Corvus hawaiiensis, Hawaiian crow (2018)
- Eopsaltria australis, Eastern yellow robin (2019)
- Ficedula albicollis, collared flycatcher (2012)
- Ficedula hypoleuca, pied flycatcher (2012)
- Geospiza fortis, medium ground-finch (2014)
- Hirundo rustica, barn swallow (2018)
- Lonchura striata domestica, Society finch (2018)
- Manacus vitellinus, golden-collared manakin (2014)
- Lycocorax pyrrhopterus, Paradise-crow (2019)
- Manacus vitellinus, golden-collared manakin (2014)
- Paradisaea rubra, red bird-of-paradise (2019)
- Pteridophora alberti, king of saxony bird-of-paradise (2019)
- Ptiloris paradiseus, paradise riflebird (2019)
- Taeniopygia guttata, zebra finch (2010)
- Order Pelecaniformes
- Egretta garzetta, little egret (2014)
- Pelecanus crispus, Dalmatian pelican (2014)
- Order Phaethontiformes
- Order Phoenicopteriformes
- Phoenicopterus ruber ruber, American flamingo (2014)
- Order Piciformes
- Picoides pubescens, downy woodpecker (2014)
- Order Podicipediformes
- Order Procellariiformes
- Fulmarus glacialis, northern fulmar (2014)
- Order Pterocliformes
- Pterocles gutturalis, yellow-throated sandgrouse (2014)
- Order Psittaciformes
- Amazona leucocephala, Cuban amazon (2019)
- Amazona ventralis, Hispaniolan amanzon (2019)
- Amazona vittata, Puerto Rican parrot (2012)
- Ara macao, Scarlet macaw (2013)
- Cyanoramphus malherbi, kākāriki karaka (2020)
- Melopsittacus undulatus, budgerigar (2014)
- Nestor notabilis, kea (2014)
- Order Struthioniformes
- Struthio camelus australis, common ostrich (2014)
- Order Sphenisciformes
- Aptenodytes forsteri, emperor penguin (2014)
- Aptenodytes patagonicus, king penguin (2019)
- Eudyptes chrysocome, Western rockhopper penguin (2019)
- Eudyptes chrysolophus chrysolophus, Macaroni penguin (2019)
- Eudyptes chrysolophus schlegeli, Royal penguin (2019)
- Eudyptes filholi, Eastern rockhopper penguin (2019)
- Eudyptes moseleyi, Northern rockhopper penguin (2019)
- Eudyptes pachyrhynchus, Fiordland-crested penguin (2019)
- Eudyptes robustus, Snares-crested penguin (2019)
- Eudyptes sclateri, Erect-crested penguin (2019)
- Eudyptula minor albosignata, white-flippered penguin (2019)
- Eudyptula minor minor, little blue penguin (2019)
- Eudyptula novaehollandiae, fairy penguin (2019)
- Megadyptes antipodes antipodes, yellow eyed penguin or hoiho (2019)
- Pygoscelis adeliae, Adélie penguin (2014)
- Pygoscelis antarctica, chinstrap penguin (2019)
- Pygoscelis papua, gentoo penguin (2019)
- Spheniscus demersus, African penguin (2019)
- Spheniscus humboldti, Humboldt penguin (2019)
- Spheniscus magellanicus, Magellanic penguin (2019)
- Spheniscus mendiculus, Galápagos penguin (2019)
- Order Strigiformes
- Tyto alba, barn owl (2014)
- Strix occidentalis caurina, northern spotted owl (2017)
- Strix varia, Barred owl (2017)
- Order Suliformes
- Phalacrocorax auritus, double-crested cormorant (2017)
- Phalacrocorax brasilianus, Neotropic cormorant (2017)
- Phalacrocorax carbo, great cormorant (2014)
- Phalacrocorax harrisi, Galapagos cormorant (2017)
- Phalacrocorax pelagicus, pelagic cormorant (2017)
- Order Tinamiformes
- Tinamus guttatus, white-throated tinamou (2014)
- Order Trochiliformes
- Calypte anna, Anna's hummingbird (2014)
- Order Trogoniformes
- Apaloderma vittatum, bar-tailed trogon (2014)
Mammals
- Subclass Prototheria, Order Monotremata, Family Ornithorhynchidae
- Ornithorhynchus anatinus, platypus (2007)
- Subclass Theria (marsupials and placental mammals)
- Infraclass Metatheria (marsupials)
- Order Didelphimorphia, Family Didelphidae (opossums)
- Monodelphis domestica, gray short-tailed opossum (2007)
- Order Dasyuromorphia
- Order Diprotodontia
- Family Macropodidae
- Macropus eugenii, tammar wallaby (2011)
- Family Phascolarctidae
- Phascolarctos cinereus, koala (2013 draft)
- Infraclass Eutheria (placental mammals)
- Family Macropodidae
- Order Didelphimorphia, Family Didelphidae (opossums)
- Infraclass Metatheria (marsupials)
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- Order Erinaceomorpha, Family Erinaceidae
- Erinaceus europaeus, western European hedgehog
- Order Eulipotyphla, Family Solenodontidae
- Order Chiroptera
- Family Megadermatidae
- Megaderma lyra, greater false vampire bat (2013)
- Family Mormoopidae
- Pteronotus parnellii, Parnell's mustached bat (2013)
- Family Pteropodidae
- Pteropus vampyrus, fruit bat (2012)
- Eidolon helvum, Old World fruit bat (2013)
- Family Rhinolophidae
- Family Vespertilionidae
- Myotis lucifugus, little brown bat (2010)
- Family Phyllostomidae
- Leptonycteris yerbabuenae, long nosed bat (2020)
- Leptonycteris nivalis, greater long nosed bat (2020)
- Musonycteris harrisoni, banana bat (2020)
- Artibeus jamaicensis, Jamaican fruit bat (2020)
- Macrotus waterhousii, Waterhouse's leaf-nosed bat (2020)
- Family Megadermatidae
- Order Primates
- Order Erinaceomorpha, Family Erinaceidae
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- Family Cercopithecidae
- Macaca mulatta, rhesus macaque (2007 & Chinese rhesus macaque Macaca mulatta lasiota in 2011)
- Macaca fascicularis, Cynomolgus or crab-eating macaque (2011)
- Rhinopithecus roxellana, golden snub-nosed monkey (2019)
- Family Hominidae
- Subfamily Ponginae
- Pongo pygmaeus/Pongo abelii, orangutan (Borneo/Sumatra) (2011)
- Subfamily Homininae
- Gorilla gorilla, western gorilla (2012)
- Homo sapiens, modern human (draft 2001 91%-96% complete)
- Homo neanderthalensis, Neanderthal (draft 2010)
- Pan troglodytes, chimpanzee (2005)
- Pan paniscus, bonobo (2012)
- Subfamily Ponginae
- Family Cercopithecidae
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Strain: C57BL/6J, mouse (2002)
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- Rattus norvegicus, rat (2004)
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- Order Lagomorpha
- Family Leporidae
- Oryctolagus cuniculus, European rabbit (2010)
- Family Leporidae
- Order Lagomorpha
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Protostomia
Insects
- Order Blattodea
- Blattella germanica, German cockroach (2018)
- Periplaneta americana, American cockroach (2018)
- Zootermopsis nevadensis, a dampwood termite (2014
- Cryptotermes secundus, a drywood termite(2018)
- Macrotermes natalensis, a higher termite (2014
- Order Coleoptera
- Dendroctonus ponderosae Hopkins, beetle (mountain pine beetle) (2013)
- Aquatica lateralis, Japanese aquatic firefly "Heike-botaru" (firefly) (2018)
- Photinus pyralis, Big Dipper firefly (2018)
- Protaetia brevitarsis, White-spotted flower chafer (2019)
- Tribolium castaneum Strain:GA-2, beetle (red flour beetle) (2008)
- Order Diptera
- Family Calliphoridae
- Aldrichina grahami, Forensic blowfly (2020)
- Family Chironomidae
- Dasypogon diadema, Hunting Robber fly (2019)
- Parochlus steinend, Antarctic winged midge (2017)
- Proctacanthus coquilletti, Assassin fly (2017)
- Family Culicidae (mosquitoes)
- Aedes aegypti Strain:LVPib12, mosquito (vector of dengue fever, etc.) (2007)
- Aedes albopictus (2015)
- Anopheles darlingi
- Anopheles gambiae Strain: PEST, mosquito (vector of malaria) (2002)
- Anopheles gambiae Strain: M, mosquito (vector of malaria) (2010)
- Anopheles gambiae Strain: S, mosquito (vector of malaria) (2010))
- Anopheles sinensis, mosquito (vector of vivax malaria, lympahtic filariasis and Setaria infections), (2014)
- Anopheles stephensii
- Anopheles arabiensis (2015)
- Anopheles quadriannulatus (2015)
- Anopheles merus (2015)
- Anopheles melas (2015)
- Anopheles christyi (2015)
- Anopheles epiroticus (2015)
- Anopheles maculatus (2015)
- Anopheles culicifacies (2015)
- Anopheles minimus (2015)
- Anopheles funestus (2015)2019
- Anopheles dirus (2015)
- Anopheles farauti (2015)
- Anopheles atroparvus (2015)
- Anopheles sinensis (2015)
- Anopheles albimanus (2015)
- Culex quinquefasciatus, mosquito (vector of West Nile virus, filariasis etc.) (2010)
- Family Drosophilidae (fruit flies)
- Drosophila albomicans, fruit fly (2012)
- Drosophila ananassae, fruit fly (2007)
- Drosophila biarmipes, fruit fly (2011)
- Drosophila bipectinata, fruit fly (2011)
- Drosophila erecta, fruit fly (2007)
- Drosophila elegans, fruit fly (2011)
- Drosophila eugracilis, fruit fly (2011)
- Drosophila ficusphila, fruit fly (2011)
- Drosophila grimshawi, fruit fly (2007)
- Drosophila kikkawai, fruit fly (2011)
- Drosophila melanogaster, fruit fly (model organism) (2000)
- Drosophila mojavensis, fruit fly (2007)
- Drosophila neotestacea, fruit fly (transcriptome 2014)
- Drosophila persimilis, fruit fly (2007)
- Drosophila pseudoobscura, fruit fly (2005)
- Drosophila rhopaloa, fruit fly (2011)
- Drosophila santomea, fruit fly
- Drosophila sechellia, fruit fly (2007)
- Drosophila simulans, fruit fly (2007)
- Drosophila takahashi, fruit fly (2011)
- Drosophila virilis, fruit fly (2007)
- Drosophila willistoni, fruit fly (2007)
- Drosophila yakuba, fruit fly (2007)
- Family Phoridae
- Megaselia abdita, scuttle fly (transcriptome 2013)
- Family Psychodidae (drain flies)
- Clogmia albipunctata, moth midge (transcriptome 2013)
- Family Sarcophagidae (flesh flies)
- Sarcophaga Bullata, Flesh fly (2019)
- Family Syrphidae (hoverflies)
- Episyrphus balteatus, hoverfly (transcriptome 2011)
- Family Calliphoridae
- Order Hemiptera
- Acyrthosiphon pisum, aphid (pea aphid) (2010)
- Ericerus pela, Chinese wax scale insect (2019)
- Laodelphax striatellus, small brown planthopper (2017)
- Lycorma delicatula, spotted lanternfly (2019)
- Rhodnius prolixus, kissing-bug (2015)
- Rhopalosiphum maidis, Corn leaf aphid (2019)
- Sitobion miscanthi, Indian grain aphid (2019)
- Triatoma rubrofasciata, assassin bug (2019)
- Order Hymenoptera
- Acromyrmex echinatior colony Ae372, ant (Panamanian leafcutter) (2011)
- Apis mellifera, bee (honey bee), (model for eusocial behavior) (2006)
- Atta cephalotes, ant (leaf-cutter ant) (2011)
- Camponotus floridanus, ant (2010)
- Cerapachys biroi, ant (clonal raider ant)(2014)
- Harpegnathos saltator, ant (2010)
- Lasius niger, ant (black garden ant)(2017)
- Linepithema humile, ant (Argentine ant) (2011)
- Nasonia giraulti, wasp (parasitoid wasp) (2010)
- Nasonia longicornis, wasp (parasitoid wasp) (2010)
- Nasonia vitripennis, wasp (parasitoid wasp; model organism) (2010)
- Nomia Melanderi, Alkali bee (2019)
- Pogonomyrmex barbatus, ant (red harvester ant) (2011)
- Solenopsis invicta, ant (fire ant) (2011)
- Order Lepidoptera
- Antharaea yamamai, Japanese oak silk moth (2019)
- Bicyclus anynana, squinting bush brown (2017)
- Bombyx mori Strain:p50T, moth (domestic silk worm) (2004)
- Cydia pomonella, codling moth (2019)
- Danaus plexippus, butterfly (monarch butterfly) (2011)
- Heliconius melpomene, butterfly (2012)
- Melitaea cinxia, Glanville fritillary butterfly (2014)
- Megathymus ursus violae, bear giant skipper butterfly (2018)
- Papilio bianor, Chinese peacock butterfly (2019)
- Pieris rapae, small cabbage white butterfly (2016)
- Plutella xylostella, moth (diamondback moth) (2013)
- Spodoptera frugiperda, Fall armyworm (2017)
- Eudocima phalonia, fruit-piercing moth (2017)
- Order Orthoptera
- Locusta migratoria, migratory locust (2014)
- Schistocerca gregaria, desert locust (2020)
- Order Phthiraptera
- Pediculus humanus, louse (sucking louse; parasite) (2010)
- Order Trichoptera
- Stenopsyche tienmushanensis, Caddisfly (2018)
Crustaceans
- Acartia tonsa dana, cosmopolitan calanoid copepod (2019)
- Daphnia pulex, water flea (2007)
- Eulimnadia Texana, Clam Shrimp (2018)
- Neocaridina denticulata, shrimp (2014)
- Parhyale hawaiensis, amphipod (2016)
- Portunus trituberculatus, swimming crab (2020)
- Procambarus virginalis, marbled crayfish (2018)
- Tigriopus kingsejongensis, antarctic-endemic copepod (2017)
Chelicerates
- Limulus polyphemus, Atlantic horseshoe crab (2014)
- Carcinoscorpius rotundicauda, mangrove horseshoe crab (2020)
Of which Arachnids:
- Acanthoscurria geniculata, Brazilian whiteknee tarantula (2014)
- Dysdera silvatica, Canary Island nocturnal endemic woodlouse spider (2019)
- Ixodes scapularis, (deer tick) (2016)
- Mesobuthus martensii, Chinese scorpion (2013)
- Nephila clavipes, (golden silk orb-weaver) (2017)
- Parasteatoda tepidariorum, (common house spider) (2017)
- Stegodyphus mimosarum, African social velvet spider (2014)
- Tetranychus urticae, spider mite (2011)
- Tropilaelaps mercedesae, (honeybee mite) (2017)
Myriapoda
- Strigamia maritima, centipede
Tardigrades
- Hypsibius dujardini, water bear (2015)
Molluscs
- Achatina fulica, giant African snail (2019)
- Architeuthis dux, giant squid (2020)
- Argopecten purpuratus, peruvian scallop (2018)
- Bathymodiolus platifrons, seep mussel (2017
- Biomphalaria glabrata, a medically-important air-breathing freshwater snail in the family Planorbidae (2017)
- Chlamys farreri, Zhikong scallop (2017)
- Crassostrea gigas, Pacific oyster (2012)
- Dreissena rostriformis, Quagga mussel (2019)
- Euprymna scolopes, Hawaiian bobtail squid (2019)
- Elysia chlorotica, a solar-powered sea slug (2019)
- Haliotis discus hannai, pacific abalone (2017)
- Lottia gigantea, owl limpet (2013)
- Limnoperna fortunei, invasive golden mussel (2017)
- Modiolus philippinarum, shallow water mussel (2017)
- Mytilus galloprovincialis, Mediterranean mussel (2016)
- Octopus bimaculoides, California two-spot octopus (2015)
- Octopus minor, common long-arm octopus (2018
- Octopus vulgaris, common octopus (2019)
- Patinopecten yessoensis, Yesso scallop (2017)
- Pecten maximus, Great scallop (2020)
- Pinctada fucata, Pearl oyster (2012)
- Pomacea canaliculata, golden apple snail (2018)
- Ruditapes philippinarum, Manila clam (2017)
- Saccostrea glomerata, Sydney rock oyster (2018)
- Scapharca broughtonii, Blood clam (2019)
- Venustaconcha ellipsiformis, freshwater mussel (2018)
Platyhelminthes
- Clonorchis sinensis, liver fluke (human pathogen) (draft 2011)
- Echinococcus granulosus, tapeworm (dog pathogen) (2013, 2013)
- Echinococcus multilocularis, tapeworm (2013)
- Hymenolepis microstoma, tapeworm (2013)
- Limnoperna fortunei, golden mussel (2017)
- Schistosoma haematobium, schistosome (human pathogen) (2012 2019)
- Schistosoma japonicum, schistosome (human pathogen) (2009)
- Schistosoma mansoni, schistosome (human pathogen) (2009, 2012)
- Schmidtea mediterranea, planarian (model organism) (2006)
- Taenia solium, tapeworm (2013)
Nematodes
- Ancylostoma ceylanicum, zoonotic hookworm infecting both humans and other mammals (2015)
- Ascaris suum, pig-infecting giant roundworm, closely related to human-infecting giant roundworm Ascaris lumbricoides (2011)
- Brugia malayi (Strain:TRS), human-infecting filarial parasite (2007)
- Bursaphelenchus xylophilus, infects pine trees (2011)
- Caenorhabditis angaria (Strain:PS1010) (2010)
- Caenorhabditis brenneri, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Caenorhabditis briggsae (2003)
- Caenorhabditis elegans (Strain:Bristol N2), model organism (1998)
- Caenorhabditis remanei, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
- Dirofilaria immitis, dog-infecting filarial parasite (2012)
- Globodera pallida, plant pathogen (2014)
- Haemonchus contortus, blood-feeding parasite infecting sheep and goats (2013)
- Heterodera glycines, soybean cyst nematode (2019)
- Heterorhabditis bacteriophora, (2013)
- Loa loa, human-infecting filarial parasite (2013)
- Meloidogyne hapla, northern root-knot nematode (plant pathogen) (2008)
- Meloidogyne incognita, southern root-knot nematode (plant pathogen) (2008)
- Necator americanus, human-infecting hookworm (2014)
- Onchocerca volvulus, human-infecting filarial parasite
- Pristionchus pacificus, model invertebrate (2008)
- Romanomermis culicivorax, entomopathogenic nematode that invades larvae of various mosquito species (2013)
- Schistosoma haematobium, urinary blood fluke infecting humans (2019)
- Trichuris suis, pig-infecting whipworm (2014)
- Trichuris muris, mouse-infecting whipworm (2014)
- Trichuris trichiura, human-infecting whipworm (2014)
- Wuchereria bancrofti, human-infecting filarial parasite
Annelids
- Capitella teleta, polychaete (2007, 2013)
- Helobdella robusta, leech (2007, 2013)
- Eisenia fetida, earthworm (2015, 2016)
Brachiopoda
- Lingula anatina, brachiopod (2015,)
Rotifera
- Adineta vaga, rotifer (2013,)
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List of sequenced animal genomes Facts for Kids. Kiddle Encyclopedia.